Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ABVJ71_RS03870 Genome accession   NZ_CP159358
Coordinates   729077..730327 (-) Length   416 a.a.
NCBI ID   WP_353855688.1    Uniprot ID   -
Organism   Bacillus sp. Bos-x628     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 724077..735327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS03850 spoVS 724639..724899 (-) 261 WP_003211281.1 stage V sporulation protein SpoVS -
  ABVJ71_RS03855 - 725102..725896 (-) 795 WP_353855685.1 TIGR00282 family metallophosphoesterase -
  ABVJ71_RS03860 rny 725985..727550 (-) 1566 WP_353855686.1 ribonuclease Y -
  ABVJ71_RS03865 recA 727858..728898 (-) 1041 WP_353855687.1 recombinase RecA Machinery gene
  ABVJ71_RS03870 cinA 729077..730327 (-) 1251 WP_353855688.1 competence/damage-inducible protein A Machinery gene
  ABVJ71_RS03875 pgsA 730344..730925 (-) 582 WP_353855689.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABVJ71_RS03880 - 730996..731895 (-) 900 WP_353855690.1 RodZ family helix-turn-helix domain-containing protein -
  ABVJ71_RS03885 - 731919..732710 (-) 792 WP_353855691.1 DUF3388 domain-containing protein -
  ABVJ71_RS03890 - 732842..733099 (-) 258 WP_353855692.1 DUF3243 domain-containing protein -
  ABVJ71_RS03895 - 733173..733901 (-) 729 WP_353855693.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45793.86 Da        Isoelectric Point: 4.8505

>NTDB_id=1013361 ABVJ71_RS03870 WP_353855688.1 729077..730327(-) (cinA) [Bacillus sp. Bos-x628]
MNSERKAEIIAVGSELLLGQITNTNAQYISKQLAEIGVNVYYHTAVGDNPERLKQAIRVAQERSNLIIFSGGLGPTKDDL
TKETIANMLGKELVLNEEAFESIQDYFQKTGRNMSPNNRKQALVLEGSEVLVNRFGMAPGMFIQEGDTFYILLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHENEKETERLL
KETESQILERVGEYFYGYGDTSLVREVSKALHTHEKTVAAAESFTGGMFSEWLTDLEGASSIFNGSVVCYTNQVKQHVVG
CREETLSTHGAVSKECAFELAEGVRKLTGSDIGISFTGVAGPDIQEGQPVGKVFIGLSTKDQTDVFEWVFTGSRSGIRKR
AVKYGLHHLLTLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1013361 ABVJ71_RS03870 WP_353855688.1 729077..730327(-) (cinA) [Bacillus sp. Bos-x628]
TTGAATTCAGAGAGAAAAGCAGAAATCATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATATATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTCGGTGACAACCCAGAGCGTTTAA
AACAGGCCATTCGTGTGGCACAAGAAAGGTCTAATTTGATTATTTTCTCAGGTGGTCTTGGACCGACAAAAGACGATTTA
ACAAAAGAAACAATTGCAAATATGCTCGGTAAAGAGCTTGTTTTAAATGAAGAAGCTTTTGAATCAATTCAAGACTACTT
TCAAAAGACAGGACGTAACATGTCACCGAACAATCGCAAGCAGGCACTGGTTCTAGAGGGTTCTGAGGTACTTGTCAACC
GGTTTGGGATGGCACCAGGTATGTTTATCCAAGAGGGAGATACTTTTTATATCCTGCTACCTGGTCCGCCTAGTGAACTG
CACCCGATGTTTGAAAACGAAGCAAAGCCGCTTATTTCAGAGAAGCTTGGCTTAAAGGAAAAAATCGTGTCTGTTGTTCT
GCGTTTCTTCGGAATTGGTGAATCACAGCTTGAAACAGATCTCGAAGATTTAATCGACGCTCAGACCAATCCAACAATTG
CACCGCTAGCAGCCGATGGTGAAGTGACGCTGAGACTGACGGCAAAACATGAAAATGAAAAAGAAACAGAACGACTCTTA
AAGGAAACAGAATCACAAATATTAGAGCGCGTAGGGGAATATTTCTACGGATATGGTGATACATCTCTTGTCCGTGAGGT
ATCAAAGGCTTTACATACACATGAGAAAACAGTGGCTGCAGCTGAAAGCTTCACAGGCGGAATGTTCTCTGAATGGCTCA
CAGATCTCGAAGGAGCTTCGTCTATTTTTAATGGAAGTGTTGTTTGTTACACAAACCAAGTGAAACAGCATGTGGTAGGC
TGCCGGGAGGAAACACTTTCTACCCATGGTGCTGTAAGCAAAGAGTGTGCCTTTGAACTCGCTGAGGGCGTAAGAAAGCT
AACCGGAAGTGATATCGGAATTAGCTTTACTGGTGTTGCAGGGCCTGATATTCAGGAAGGACAGCCTGTAGGAAAAGTGT
TTATCGGTCTTTCAACAAAAGATCAGACAGACGTCTTTGAATGGGTGTTTACGGGCAGTCGATCAGGCATTCGGAAGCGC
GCTGTGAAATATGGCTTACACCACCTACTCACATTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.458

99.76

0.743
  cinA Streptococcus mitis SK321

48.058

99.038

0.476
  cinA Streptococcus mitis NCTC 12261

47.816

99.038

0.474
  cinA Streptococcus pneumoniae TIGR4

47.573

99.038

0.471
  cinA Streptococcus pneumoniae Rx1

47.33

99.038

0.469
  cinA Streptococcus pneumoniae R6

47.33

99.038

0.469
  cinA Streptococcus mutans UA159

47.666

97.837

0.466
  cinA Streptococcus pneumoniae D39

47.087

99.038

0.466
  cinA Streptococcus suis isolate S10

42.857

90.865

0.389

Multiple sequence alignment