Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACKTTY_RS09450 Genome accession   NZ_AP027463
Coordinates   1962366..1963475 (-) Length   369 a.a.
NCBI ID   WP_308703489.1    Uniprot ID   -
Organism   Lactiplantibacillus brownii strain MH-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1957366..1968475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTTY_RS09440 (MH1LPH_18310) - 1959429..1960235 (-) 807 WP_308703487.1 TIGR00282 family metallophosphoesterase -
  ACKTTY_RS09445 (MH1LPH_18320) rny 1960579..1962138 (-) 1560 WP_308703488.1 ribonuclease Y -
  ACKTTY_RS09450 (MH1LPH_18330) recA 1962366..1963475 (-) 1110 WP_308703489.1 recombinase RecA Machinery gene
  ACKTTY_RS09455 (MH1LPH_18340) cinA 1963567..1964829 (-) 1263 WP_308703490.1 competence/damage-inducible protein A Machinery gene
  ACKTTY_RS09460 (MH1LPH_18350) pgsA 1964961..1965545 (-) 585 WP_308703491.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACKTTY_RS09465 (MH1LPH_18360) - 1965566..1966462 (-) 897 WP_407910741.1 helix-turn-helix domain-containing protein -
  ACKTTY_RS09470 (MH1LPH_18370) yfmH 1966567..1967868 (-) 1302 WP_308703493.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39758.26 Da        Isoelectric Point: 6.0988

>NTDB_id=101165 ACKTTY_RS09450 WP_308703489.1 1962366..1963475(-) (recA) [Lactiplantibacillus brownii strain MH-1]
MADARQAALDAALKKIEKNFGKGSIMRMGDAANTEISTISSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVIDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGNPEVTPGGRALKFYATIRLEVRRAEQIKDGTDIIGNR
VRIKVVKNKVAPPFKRAEVDIMYGHGISQTGEIVDMAADKDIVKKSGSWYSYGEDRIGQGRENAKKYLEEHPDVMAEIRT
KVRKAYGMDAATKEEAEMTEDKSKSKSKAKAEPTTLDLKDDPKTAKETK

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=101165 ACKTTY_RS09450 WP_308703489.1 1962366..1963475(-) (recA) [Lactiplantibacillus brownii strain MH-1]
TTGGCTGATGCACGGCAAGCAGCACTAGATGCTGCCCTAAAAAAGATTGAAAAGAACTTTGGGAAAGGCTCCATTATGCG
GATGGGGGATGCGGCTAACACCGAAATCTCTACCATTTCAAGTGGGTCATTAGCCTTAGATGATGCGTTAGGGGTCGGTG
GTTATCCACGTGGCCGAATCGTTGAAATCTATGGCCCAGAAAGTTCTGGTAAGACGACTGTTGCGTTGCACGCTGTGGCT
GAAGTGCAAAAGCAAGGCGGGACAGCGGCTTATATTGATGCAGAAAACGCGTTGGATCCCGTTTATGCGGAACACTTAGG
CGTTAATATTGACGACTTATTGCTCTCGCAACCAGATACTGGTGAACAAGGCCTAGAAATTGCGGATGCCTTGGTTTCCA
GTGGTGCGGTTGACATCTTAGTCATTGATTCTGTGGCGGCATTAGTCCCACGGGCTGAAATTGAAGGCGAAATGGGTGAT
GCCCACGTTGGGTTACAAGCACGTTTGATGTCACAAGCGTTGCGGAAACTCTCTGGGACTTTAAATAAAACTAAAACGAT
TGCGTTATTTATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTTGGTAACCCTGAAGTGACACCTGGTGGTCGGGCTT
TGAAATTCTACGCGACTATTCGTTTGGAAGTTCGTCGCGCAGAACAGATCAAAGATGGGACCGATATTATCGGGAACCGT
GTGCGTATCAAAGTGGTCAAAAATAAGGTTGCGCCGCCATTTAAGCGTGCCGAAGTTGATATCATGTATGGTCATGGGAT
TTCACAAACTGGTGAAATCGTCGACATGGCTGCTGATAAGGACATTGTTAAGAAGAGTGGTTCTTGGTACTCTTACGGTG
AAGATCGAATTGGTCAAGGCCGTGAGAATGCGAAGAAGTATTTGGAAGAGCATCCTGATGTGATGGCTGAAATTCGGACT
AAGGTTCGTAAGGCCTATGGGATGGATGCTGCGACCAAAGAAGAAGCTGAAATGACGGAAGACAAATCAAAGTCGAAGTC
TAAAGCTAAAGCTGAACCAACCACGCTTGATCTCAAAGATGACCCTAAAACGGCCAAAGAAACTAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

85

92.141

0.783
  recA Bacillus subtilis subsp. subtilis str. 168

75.38

89.16

0.672
  recA Streptococcus pneumoniae Rx1

65.11

98.645

0.642
  recA Streptococcus pneumoniae D39

65.11

98.645

0.642
  recA Streptococcus pneumoniae R6

65.11

98.645

0.642
  recA Streptococcus pneumoniae TIGR4

65.11

98.645

0.642
  recA Streptococcus mitis SK321

65.374

97.832

0.64
  recA Streptococcus mitis NCTC 12261

65.097

97.832

0.637
  recA Streptococcus mutans UA159

64.463

98.374

0.634
  recA Streptococcus pyogenes NZ131

68.58

89.702

0.615
  recA Lactococcus lactis subsp. cremoris KW2

68.902

88.889

0.612
  recA Ralstonia pseudosolanacearum GMI1000

63.526

89.16

0.566
  recA Acinetobacter baylyi ADP1

58.621

94.309

0.553
  recA Neisseria gonorrhoeae strain FA1090

60.299

90.786

0.547
  recA Neisseria gonorrhoeae MS11

60.299

90.786

0.547
  recA Neisseria gonorrhoeae MS11

60.299

90.786

0.547
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.846

88.076

0.545
  recA Pseudomonas stutzeri DSM 10701

58.944

92.412

0.545
  recA Vibrio cholerae strain A1552

61.728

87.805

0.542
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.728

87.805

0.542
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.756

88.889

0.531
  recA Acinetobacter baumannii D1279779

59.568

87.805

0.523
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.308

89.702

0.523
  recA Glaesserella parasuis strain SC1401

59.813

86.992

0.52
  recA Helicobacter pylori 26695

58.025

87.805

0.509
  recA Helicobacter pylori strain NCTC11637

58.025

87.805

0.509

Multiple sequence alignment