Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACKTTY_RS09455 Genome accession   NZ_AP027463
Coordinates   1963567..1964829 (-) Length   420 a.a.
NCBI ID   WP_308703490.1    Uniprot ID   -
Organism   Lactiplantibacillus brownii strain MH-1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1958567..1969829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTTY_RS09440 (MH1LPH_18310) - 1959429..1960235 (-) 807 WP_308703487.1 TIGR00282 family metallophosphoesterase -
  ACKTTY_RS09445 (MH1LPH_18320) rny 1960579..1962138 (-) 1560 WP_308703488.1 ribonuclease Y -
  ACKTTY_RS09450 (MH1LPH_18330) recA 1962366..1963475 (-) 1110 WP_308703489.1 recombinase RecA Machinery gene
  ACKTTY_RS09455 (MH1LPH_18340) cinA 1963567..1964829 (-) 1263 WP_308703490.1 competence/damage-inducible protein A Machinery gene
  ACKTTY_RS09460 (MH1LPH_18350) pgsA 1964961..1965545 (-) 585 WP_308703491.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACKTTY_RS09465 (MH1LPH_18360) - 1965566..1966462 (-) 897 WP_407910741.1 helix-turn-helix domain-containing protein -
  ACKTTY_RS09470 (MH1LPH_18370) yfmH 1966567..1967868 (-) 1302 WP_308703493.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACKTTY_RS09475 (MH1LPH_18380) yfmF 1967855..1969126 (-) 1272 WP_308703494.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45106.06 Da        Isoelectric Point: 4.9101

>NTDB_id=101166 ACKTTY_RS09455 WP_308703490.1 1963567..1964829(-) (cinA) [Lactiplantibacillus brownii strain MH-1]
MQAEIIAVGTEILLGQITNTNSTHIAQGLAELGIESYYQTVVGDNPERLASVIEIAARRNDLVILSGGLGPTKDDLTKQT
LAQYLNVSLVEDAHAMTVIDDYFKTTGKIMTANNRIQALYPAGATPLTNHNGMAVGAFYRSPDSADFLLLPGPPREMTKM
FDTEAKPKLQAAYGQQAQIYSRVLRFFGIGESKLVTELQALIDDQQAVTIAPYAKTNEVTLRISAQAESQAAAKAALDAV
ENQIKAKVGDYFYGYGDDNSLAKVVIKTMIARRLSLTAAESLTAGEFQSTIGGVPGVSEIFPGGFVTYANAVKHQLVQVP
QTTIDQDGVVSEATAIAMADGARTQLQTDVALSFTGVAGPDELEGQPAGTVWIGLAYRQQPTTGHLYHFAGDRQKIRERS
VMAGLDLLRHALTAEQPTEK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=101166 ACKTTY_RS09455 WP_308703490.1 1963567..1964829(-) (cinA) [Lactiplantibacillus brownii strain MH-1]
ATGCAAGCAGAAATAATTGCAGTTGGTACCGAGATTTTGCTCGGTCAGATTACTAATACCAATAGCACTCATATTGCACA
AGGTCTCGCTGAGCTTGGTATTGAAAGCTATTACCAAACAGTCGTTGGTGATAACCCAGAACGGTTGGCTAGTGTGATTG
AAATCGCTGCCCGTCGAAATGATTTGGTGATTTTATCTGGTGGTCTCGGCCCAACCAAAGATGATTTAACCAAGCAAACG
TTGGCTCAGTATTTAAACGTCTCGTTAGTAGAAGATGCGCACGCGATGACGGTGATCGATGATTACTTTAAGACCACTGG
GAAAATCATGACCGCCAATAACCGGATTCAAGCCTTGTATCCGGCCGGTGCAACACCTTTGACCAATCATAATGGGATGG
CAGTGGGGGCCTTCTATCGCTCACCAGATTCGGCCGACTTTTTGCTGTTACCAGGGCCACCCCGTGAAATGACTAAGATG
TTTGATACGGAGGCCAAGCCTAAATTACAAGCGGCCTATGGGCAACAAGCACAGATCTATTCACGGGTCTTGCGGTTCTT
TGGTATTGGTGAATCTAAGCTAGTGACCGAGTTGCAAGCTTTGATCGATGATCAACAAGCAGTGACGATTGCCCCATATG
CTAAGACGAACGAGGTCACGCTGCGGATCAGCGCCCAAGCTGAGTCACAAGCAGCGGCTAAAGCGGCTTTAGATGCCGTT
GAAAATCAAATCAAGGCCAAAGTTGGCGACTACTTTTATGGGTATGGCGATGACAACTCGCTTGCCAAAGTCGTTATTAA
AACCATGATTGCCCGTCGTTTAAGCTTAACCGCAGCCGAGAGTTTAACTGCCGGTGAATTCCAAAGTACCATTGGTGGCG
TTCCGGGCGTCTCAGAAATCTTTCCAGGTGGCTTTGTGACCTATGCGAATGCGGTAAAGCATCAATTGGTACAGGTTCCA
CAAACTACAATTGATCAAGATGGTGTCGTTTCTGAAGCGACGGCGATCGCCATGGCGGATGGGGCCCGTACCCAGCTACA
AACGGATGTCGCGCTGAGCTTCACCGGCGTTGCAGGTCCAGATGAGCTTGAAGGCCAACCAGCTGGTACGGTATGGATTG
GTCTGGCGTATCGTCAACAGCCGACGACTGGGCACTTGTATCACTTTGCCGGCGACCGGCAAAAGATTCGTGAGCGCAGT
GTGATGGCCGGATTAGACCTGTTACGGCATGCTTTAACAGCTGAGCAGCCAACTGAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

48.7

100

0.49
  cinA Streptococcus pneumoniae TIGR4

48.7

100

0.49
  cinA Streptococcus pneumoniae Rx1

48.463

100

0.488
  cinA Streptococcus pneumoniae R6

48.463

100

0.488
  cinA Streptococcus pneumoniae D39

48.227

100

0.486
  cinA Streptococcus mitis NCTC 12261

48.227

100

0.486
  cinA Streptococcus mutans UA159

47.971

99.762

0.479
  cinA Bacillus subtilis subsp. subtilis str. 168

46.437

96.905

0.45
  cinA Streptococcus suis isolate S10

40.723

98.81

0.402

Multiple sequence alignment