Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABOA58_RS09260 Genome accession   NZ_CP158190
Coordinates   1867796..1868842 (+) Length   348 a.a.
NCBI ID   WP_101224704.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain LSJ146     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1862796..1873842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOA58_RS09235 (ABOA58_09220) - 1863240..1863497 (+) 258 WP_350302044.1 DUF3243 domain-containing protein -
  ABOA58_RS09240 (ABOA58_09225) - 1863738..1864529 (+) 792 WP_034313530.1 DUF3388 domain-containing protein -
  ABOA58_RS09245 (ABOA58_09230) - 1864538..1865443 (+) 906 WP_350302045.1 RodZ family helix-turn-helix domain-containing protein -
  ABOA58_RS09250 (ABOA58_09235) pgsA 1865608..1866192 (+) 585 WP_034313524.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABOA58_RS09255 (ABOA58_09240) cinA 1866216..1867448 (+) 1233 WP_350302046.1 competence/damage-inducible protein A Machinery gene
  ABOA58_RS09260 (ABOA58_09245) recA 1867796..1868842 (+) 1047 WP_101224704.1 recombinase RecA Machinery gene
  ABOA58_RS09265 (ABOA58_09250) rny 1869196..1870755 (+) 1560 WP_063231807.1 ribonuclease Y -
  ABOA58_RS09270 (ABOA58_09255) - 1870897..1871694 (+) 798 WP_350302047.1 TIGR00282 family metallophosphoesterase -
  ABOA58_RS09275 (ABOA58_09260) spoVS 1871869..1872129 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -
  ABOA58_RS09280 (ABOA58_09265) - 1872295..1873197 (+) 903 WP_350302829.1 dipeptidase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38017.04 Da        Isoelectric Point: 4.7300

>NTDB_id=1010224 ABOA58_RS09260 WP_101224704.1 1867796..1868842(+) (recA) [Peribacillus frigoritolerans strain LSJ146]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQSDRRISTISSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQKTGGTAAFIDAEHALDPAYSEKLGVNIDDLLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARMMSQALRKLSGAINKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNEIVGNKT
KIKVVKNKVAPPFRQAEVDIMYGQGISQEGEIIDMGADLDIVLKSGSWYSYNEERVGQGRENAKLFLKENQDIAQEISQK
IRDHYNLDGEHELPPEENEPEEHFELLD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1010224 ABOA58_RS09260 WP_101224704.1 1867796..1868842(+) (recA) [Peribacillus frigoritolerans strain LSJ146]
GTGAGTGATCGTCAAGCGGCTTTAGATATGGCGTTAAAACAAATTGAAAAACAATTTGGTAAAGGTTCTATTATGAAACT
TGGGGAACAGTCTGATCGTAGGATTTCAACGATTTCAAGCGGTTCTTTAGCATTGGACGTAGCATTGGGAGTGGGCGGAT
ATCCAAGAGGCCGGGTCATTGAGATATATGGACCTGAAAGCTCCGGTAAAACGACTGTTGCATTACATGCTATTGCAGAA
GTACAAAAGACTGGCGGCACGGCTGCATTCATTGATGCAGAGCATGCTTTAGATCCAGCATATTCAGAAAAACTTGGTGT
GAATATCGATGACTTACTGCTTTCACAGCCTGATACGGGTGAACAGGCCTTGGAGATCGCTGAAGCATTAGTTCGAAGTG
GAGCGGTGGATATCATTGTCATTGATTCGGTGGCAGCACTTGTTCCTAAAGCTGAAATCGAAGGCGAAATGGGAGATTCC
CATATGGGTCTTCAAGCGCGGATGATGTCCCAGGCGCTTAGAAAACTGTCTGGTGCCATTAATAAATCAAATACCATTGC
CATTTTCATTAACCAAGTCCGTGAAAAAATCGGTGTTATGTTTGGGAACCCTGAAACGACTCCGGGAGGCCGGGCATTGA
AGTTCTATTCAACTGTTCGTCTGGAAGTGCGCCGTGCGGAACAATTAAAACAGGGTAATGAAATCGTCGGTAATAAAACG
AAAATCAAAGTTGTTAAAAACAAGGTTGCTCCACCATTCCGTCAAGCGGAAGTTGACATCATGTATGGTCAAGGGATTTC
CCAGGAAGGTGAAATCATCGATATGGGTGCAGATCTTGATATCGTCCTTAAAAGCGGTTCGTGGTATTCATACAATGAAG
AGCGTGTCGGACAAGGCCGCGAAAATGCGAAGCTGTTCTTGAAAGAAAATCAGGATATCGCTCAGGAAATTTCTCAGAAA
ATCAGAGATCACTATAATCTCGATGGAGAGCATGAATTACCGCCAGAAGAAAATGAACCAGAAGAGCATTTTGAATTGCT
TGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.366

94.253

0.805
  recA Latilactobacillus sakei subsp. sakei 23K

73.156

97.414

0.713
  recA Streptococcus mitis SK321

65.598

98.563

0.647
  recA Streptococcus mitis NCTC 12261

67.164

96.264

0.647
  recA Streptococcus pneumoniae Rx1

67.164

96.264

0.647
  recA Streptococcus pneumoniae D39

67.164

96.264

0.647
  recA Streptococcus pneumoniae R6

67.164

96.264

0.647
  recA Streptococcus pneumoniae TIGR4

67.164

96.264

0.647
  recA Streptococcus mutans UA159

67.173

94.54

0.635
  recA Streptococcus pyogenes NZ131

66.972

93.966

0.629
  recA Lactococcus lactis subsp. cremoris KW2

64.583

96.552

0.624
  recA Ralstonia pseudosolanacearum GMI1000

69.01

89.943

0.621
  recA Vibrio cholerae strain A1552

66.044

92.241

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.044

92.241

0.609
  recA Neisseria gonorrhoeae MS11

65.732

92.241

0.606
  recA Neisseria gonorrhoeae MS11

65.732

92.241

0.606
  recA Neisseria gonorrhoeae strain FA1090

65.732

92.241

0.606
  recA Acinetobacter baumannii D1279779

61.047

98.851

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.72

94.253

0.601
  recA Acinetobacter baylyi ADP1

60.405

99.425

0.601
  recA Helicobacter pylori 26695

60.756

98.851

0.601
  recA Helicobacter pylori strain NCTC11637

60.756

98.851

0.601
  recA Pseudomonas stutzeri DSM 10701

64.375

91.954

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

93.966

0.583
  recA Glaesserella parasuis strain SC1401

63.438

91.954

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.875

91.954

0.569

Multiple sequence alignment