Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ABOA58_RS09255 Genome accession   NZ_CP158190
Coordinates   1866216..1867448 (+) Length   410 a.a.
NCBI ID   WP_350302046.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain LSJ146     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1861216..1872448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOA58_RS09230 (ABOA58_09215) - 1862434..1863159 (+) 726 WP_241591249.1 SDR family oxidoreductase -
  ABOA58_RS09235 (ABOA58_09220) - 1863240..1863497 (+) 258 WP_350302044.1 DUF3243 domain-containing protein -
  ABOA58_RS09240 (ABOA58_09225) - 1863738..1864529 (+) 792 WP_034313530.1 DUF3388 domain-containing protein -
  ABOA58_RS09245 (ABOA58_09230) - 1864538..1865443 (+) 906 WP_350302045.1 RodZ family helix-turn-helix domain-containing protein -
  ABOA58_RS09250 (ABOA58_09235) pgsA 1865608..1866192 (+) 585 WP_034313524.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABOA58_RS09255 (ABOA58_09240) cinA 1866216..1867448 (+) 1233 WP_350302046.1 competence/damage-inducible protein A Machinery gene
  ABOA58_RS09260 (ABOA58_09245) recA 1867796..1868842 (+) 1047 WP_101224704.1 recombinase RecA Machinery gene
  ABOA58_RS09265 (ABOA58_09250) rny 1869196..1870755 (+) 1560 WP_063231807.1 ribonuclease Y -
  ABOA58_RS09270 (ABOA58_09255) - 1870897..1871694 (+) 798 WP_350302047.1 TIGR00282 family metallophosphoesterase -
  ABOA58_RS09275 (ABOA58_09260) spoVS 1871869..1872129 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44986.24 Da        Isoelectric Point: 5.1325

>NTDB_id=1010223 ABOA58_RS09255 WP_350302046.1 1866216..1867448(+) (cinA) [Peribacillus frigoritolerans strain LSJ146]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAEMGINVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFQKRERPMTENNKKQALVLEGSEVLANDHGMAPGMVLSKSGITYMLLPGPPSEMEPMF
LSYGYEKIMNKLEKHERIDSKVLRFYGIGEAELETVIEDLLVNQTNPTIAPLAAEGEVTLRITAKDSSKEKCEELILETE
KEILSRVGKFHYGSDNTSLIKELVKELTVRKLSIAAAESLTGGMFQEQLTTIPGAGKVFKGGIVCYTNDAKSNVLGVSDD
TISEHGVVSGECAMEMASNVRSKLNADVGISFTGVAGPDEQEGKPVGTVFIGISYRDGNTHFKELNLSGSRAQNRIRSVK
YGCHYLLRDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1010223 ABOA58_RS09255 WP_350302046.1 1866216..1867448(+) (cinA) [Peribacillus frigoritolerans strain LSJ146]
ATGGATGCAGAAATCATTGCAGTGGGCTCAGAGCTTCTTTTAGGACAAATCAATAACACTAATGGAAGGTTCTTATCGCA
GCAGTTTGCGGAAATGGGTATCAACGTTTTTTACCATACTGTCGTCGGGGATAACGACCGCCGTTTACAACAAGCTATAG
AAATCGCTGAATCGAGGGCGAACTTGATTGTTTTTACCGGTGGACTCGGTCCTACCAAAGATGATTTAACGAAAGAAACG
ATTGCTCGCCATATAGGGAAAAAGCTCGTTTTTAATGATGAAGCTTTGCAATCCATTGAAGCTTACTTCCAAAAACGGGA
ACGGCCGATGACGGAAAACAACAAAAAACAGGCCCTTGTCTTAGAAGGCAGTGAAGTGTTGGCAAACGATCATGGCATGG
CACCGGGAATGGTCTTGTCCAAATCCGGGATTACATATATGCTTCTCCCTGGTCCGCCAAGTGAAATGGAGCCGATGTTT
TTAAGTTATGGTTATGAAAAGATCATGAATAAACTGGAAAAGCATGAACGGATCGATTCCAAGGTTCTTCGGTTCTACGG
TATAGGTGAAGCCGAACTGGAAACGGTGATTGAAGATCTTCTTGTCAATCAAACGAATCCGACAATTGCTCCGCTGGCAG
CCGAAGGGGAAGTGACGTTAAGGATCACCGCTAAAGACTCTTCTAAAGAAAAATGCGAAGAGCTTATTTTAGAAACGGAA
AAAGAAATTCTTAGCAGGGTCGGTAAGTTCCATTATGGAAGTGATAATACTTCGCTAATAAAGGAACTTGTAAAAGAATT
AACGGTCCGCAAGCTTTCAATTGCGGCAGCTGAAAGCTTGACCGGAGGGATGTTCCAAGAACAGCTGACAACCATTCCTG
GCGCCGGTAAGGTCTTCAAAGGCGGAATTGTCTGCTATACGAATGATGCGAAGTCGAACGTCCTTGGCGTCAGCGATGAT
ACCATATCTGAGCATGGGGTGGTCAGCGGTGAGTGTGCAATGGAAATGGCCTCTAATGTCCGGAGCAAGCTCAATGCGGA
TGTAGGCATAAGCTTTACGGGTGTTGCAGGTCCGGATGAACAAGAAGGCAAGCCTGTAGGGACAGTATTCATTGGCATTT
CCTATCGGGATGGAAACACTCATTTCAAGGAGTTGAATCTTTCCGGAAGCAGGGCGCAAAACCGGATTCGGAGTGTGAAG
TACGGCTGTCATTACCTATTAAGGGATTTATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.824

99.512

0.585
  cinA Streptococcus pneumoniae TIGR4

45.476

100

0.466
  cinA Streptococcus pneumoniae Rx1

45

100

0.461
  cinA Streptococcus mitis SK321

45

100

0.461
  cinA Streptococcus pneumoniae R6

45

100

0.461
  cinA Streptococcus pneumoniae D39

44.762

100

0.459
  cinA Streptococcus mitis NCTC 12261

44.524

100

0.456
  cinA Streptococcus mutans UA159

43.564

98.537

0.429
  cinA Streptococcus suis isolate S10

39.098

97.317

0.38

Multiple sequence alignment