Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABN702_RS09840 Genome accession   NZ_CP158164
Coordinates   1932323..1933363 (-) Length   346 a.a.
NCBI ID   WP_417900503.1    Uniprot ID   -
Organism   Bacillus sp. CSS-39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1927323..1938363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN702_RS09820 (ABN702_09800) - 1928050..1929036 (-) 987 WP_417900502.1 dipeptidase -
  ABN702_RS09825 (ABN702_09805) spoVS 1929082..1929342 (-) 261 WP_009330666.1 stage V sporulation protein SpoVS -
  ABN702_RS09830 (ABN702_09810) - 1929494..1930288 (-) 795 WP_386637388.1 TIGR00282 family metallophosphoesterase -
  ABN702_RS09835 (ABN702_09815) rny 1930397..1931956 (-) 1560 WP_239582705.1 ribonuclease Y -
  ABN702_RS09840 (ABN702_09820) recA 1932323..1933363 (-) 1041 WP_417900503.1 recombinase RecA Machinery gene
  ABN702_RS09845 (ABN702_09825) cinA 1933605..1934855 (-) 1251 WP_417900504.1 competence/damage-inducible protein A Machinery gene
  ABN702_RS09850 (ABN702_09830) pgsA 1934888..1935466 (-) 579 WP_417900505.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABN702_RS09855 (ABN702_09835) - 1935576..1936469 (-) 894 WP_417900506.1 helix-turn-helix domain-containing protein -
  ABN702_RS09860 (ABN702_09840) - 1936492..1937283 (-) 792 WP_386637398.1 DUF3388 domain-containing protein -
  ABN702_RS09865 (ABN702_09845) - 1937441..1937698 (-) 258 WP_386637400.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37820.06 Da        Isoelectric Point: 5.2120

>NTDB_id=1010028 ABN702_RS09840 WP_417900503.1 1932323..1933363(-) (recA) [Bacillus sp. CSS-39]
MSDRKAALDMALKQIEKQFGKGSIMKLGEQAERKISTMPSGSLALDVALGAGGYPRGRVVEIYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGHEIVGNKT
KIKVVKNKIAPPFKVAEVDIMYGEGISREGEVIDMGSDLDIVQKSGSWYSYNEERLGQGRENAKQFLKENKEVRQEIYQL
IRDHHGLDKELSAPPEENDQEELLDF

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1010028 ABN702_RS09840 WP_417900503.1 1932323..1933363(-) (recA) [Bacillus sp. CSS-39]
GTGAGTGATCGTAAAGCGGCCTTAGATATGGCATTAAAACAAATAGAAAAGCAGTTCGGTAAAGGTTCCATCATGAAATT
AGGGGAACAGGCCGAGCGTAAAATCTCCACAATGCCAAGTGGTTCCCTGGCATTGGATGTAGCATTGGGTGCCGGCGGAT
ATCCGCGAGGAAGAGTAGTGGAAATCTATGGCCCGGAATCTTCAGGTAAAACAACGGTTGCACTTCATGCAATCGCTGAG
GTACAGCAGCAGGGTGGACAAGCAGCATTTATCGATGCCGAGCATGCACTTGATCCTGTATATGCACAAAAATTGGGTGT
GAATATAGACGAATTGCTTCTATCCCAGCCGGATACTGGGGAACAGGCCCTTGAAATTGCAGAGGCACTTGTAAGAAGTG
GTGCTGTTGATATCATTGTAGTCGATTCTGTTGCAGCGCTAGTTCCAAAAGCGGAAATTGAAGGGGAAATGGGAGACTCC
CATGTAGGTCTTCAGGCCCGTCTTATGTCCCAAGCACTTCGTAAGCTTTCCGGTGCAATCAATAAATCCAAAACCATTGC
GATCTTCATCAACCAGATCCGTGAAAAAGTCGGTGTCATGTTCGGTAACCCTGAGACTACACCAGGCGGGCGTGCGCTTA
AATTCTATTCTTCCGTACGTCTAGAGGTTCGTCGTGCTGAACAGTTGAAGCAAGGTCATGAAATTGTCGGGAATAAAACG
AAAATTAAAGTAGTGAAAAATAAAATTGCCCCTCCATTCAAAGTAGCGGAAGTGGATATCATGTATGGAGAGGGAATCTC
CAGAGAGGGAGAAGTCATTGACATGGGCTCTGACCTGGATATCGTACAAAAAAGCGGATCATGGTATTCCTATAATGAGG
AAAGATTAGGCCAAGGCCGTGAGAATGCCAAGCAGTTCCTGAAGGAAAACAAGGAAGTGCGTCAAGAAATCTATCAACTA
ATCCGTGATCACCATGGTCTTGATAAAGAGTTGTCGGCTCCTCCGGAGGAAAATGACCAAGAGGAACTTCTTGATTTTTA
A

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

88.415

94.798

0.838
  recA Latilactobacillus sakei subsp. sakei 23K

72.384

99.422

0.72
  recA Streptococcus mutans UA159

68.3

100

0.685
  recA Streptococcus pneumoniae D39

68.012

100

0.682
  recA Streptococcus pneumoniae Rx1

68.012

100

0.682
  recA Streptococcus pneumoniae R6

68.012

100

0.682
  recA Streptococcus pneumoniae TIGR4

68.012

100

0.682
  recA Streptococcus mitis SK321

70.303

95.376

0.671
  recA Streptococcus pyogenes NZ131

70.427

94.798

0.668
  recA Streptococcus mitis NCTC 12261

70

95.376

0.668
  recA Lactococcus lactis subsp. cremoris KW2

67.879

95.376

0.647
  recA Neisseria gonorrhoeae MS11

63.663

99.422

0.633
  recA Neisseria gonorrhoeae MS11

63.663

99.422

0.633
  recA Neisseria gonorrhoeae strain FA1090

63.663

99.422

0.633
  recA Vibrio cholerae strain A1552

66.044

92.775

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.044

92.775

0.613
  recA Ralstonia pseudosolanacearum GMI1000

67.412

90.462

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.765

98.266

0.607
  recA Helicobacter pylori strain NCTC11637

61.012

97.11

0.592
  recA Helicobacter pylori 26695

61.012

97.11

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

94.509

0.592
  recA Glaesserella parasuis strain SC1401

64.062

92.486

0.592
  recA Pseudomonas stutzeri DSM 10701

64.062

92.486

0.592
  recA Acinetobacter baylyi ADP1

62.769

93.931

0.59
  recA Acinetobacter baumannii D1279779

62.733

93.064

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.709

91.329

0.564

Multiple sequence alignment