Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ABN702_RS09845 Genome accession   NZ_CP158164
Coordinates   1933605..1934855 (-) Length   416 a.a.
NCBI ID   WP_417900504.1    Uniprot ID   -
Organism   Bacillus sp. CSS-39     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1928605..1939855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN702_RS09825 (ABN702_09805) spoVS 1929082..1929342 (-) 261 WP_009330666.1 stage V sporulation protein SpoVS -
  ABN702_RS09830 (ABN702_09810) - 1929494..1930288 (-) 795 WP_386637388.1 TIGR00282 family metallophosphoesterase -
  ABN702_RS09835 (ABN702_09815) rny 1930397..1931956 (-) 1560 WP_239582705.1 ribonuclease Y -
  ABN702_RS09840 (ABN702_09820) recA 1932323..1933363 (-) 1041 WP_417900503.1 recombinase RecA Machinery gene
  ABN702_RS09845 (ABN702_09825) cinA 1933605..1934855 (-) 1251 WP_417900504.1 competence/damage-inducible protein A Machinery gene
  ABN702_RS09850 (ABN702_09830) pgsA 1934888..1935466 (-) 579 WP_417900505.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABN702_RS09855 (ABN702_09835) - 1935576..1936469 (-) 894 WP_417900506.1 helix-turn-helix domain-containing protein -
  ABN702_RS09860 (ABN702_09840) - 1936492..1937283 (-) 792 WP_386637398.1 DUF3388 domain-containing protein -
  ABN702_RS09865 (ABN702_09845) - 1937441..1937698 (-) 258 WP_386637400.1 DUF3243 domain-containing protein -
  ABN702_RS09870 (ABN702_09850) ymfI 1937767..1938483 (-) 717 WP_417900507.1 elongation factor P 5-aminopentanone reductase -
  ABN702_RS09875 (ABN702_09855) yfmH 1938567..1939850 (-) 1284 WP_417900508.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45715.34 Da        Isoelectric Point: 6.2378

>NTDB_id=1010029 ABN702_RS09845 WP_417900504.1 1933605..1934855(-) (cinA) [Bacillus sp. CSS-39]
MFRSAEIIAVGSELLLGQICNTNAQFLSKQLAELGINVYFHTVVGDNPDRLTTAIHTAKKRADLLIFTGGLGPTKDDLTK
ETISKVLQKNLVMDNEALTNIEAYYQKTKRTMSENNKKQAIVLEGSTVLPNDYGMAPGMALTGQNHSYMLLPGPPKELQP
MFLNYGREFILSKLGVKEQIVSKVLRFFGIGESQLETDIDDLIEQQTNPTIAPLAGDHEVTLRLTAKHHSEEEANRLISV
TEKLIQARVGEHFYGYDEDTIFSVLFGKIQHSHYTLSSAESLTGGLFSEKMTAFTGASEVIEGGIVCYTNDIKHKVLGVS
EQTLEQYGAVSEECAAEMAEQVKKLFKTDIGVSFTGVAGPGMMEGKPVGTVFIGLALPDGRTMVHSIRLAGGRDSIRQRT
VKYGCHFLLKELFKSS

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1010029 ABN702_RS09845 WP_417900504.1 1933605..1934855(-) (cinA) [Bacillus sp. CSS-39]
ATGTTTAGGAGTGCAGAAATAATTGCTGTAGGTTCTGAGCTGCTTCTGGGGCAGATATGCAACACGAACGCACAATTTCT
TTCCAAGCAGTTGGCGGAACTTGGAATCAATGTTTATTTTCATACTGTAGTCGGGGACAATCCTGATAGACTGACCACAG
CTATACATACCGCAAAAAAGCGGGCCGACCTTCTCATTTTCACTGGAGGACTCGGACCAACCAAGGACGACCTGACCAAG
GAAACGATATCGAAGGTTCTACAAAAGAACCTTGTAATGGACAATGAGGCATTAACGAATATTGAAGCCTACTATCAAAA
AACAAAAAGAACGATGAGTGAGAACAATAAAAAACAGGCTATCGTTCTAGAGGGTTCTACAGTGTTACCGAACGATTACG
GAATGGCACCAGGCATGGCTCTTACCGGCCAGAATCACAGTTATATGCTCCTGCCTGGTCCTCCAAAAGAGCTGCAGCCT
ATGTTCCTGAACTACGGAAGGGAATTTATCCTCTCCAAGCTTGGTGTGAAGGAACAGATAGTTTCAAAGGTTCTGCGCTT
TTTTGGAATTGGGGAATCACAGCTTGAAACAGATATCGACGATTTGATTGAGCAACAGACAAATCCTACTATTGCGCCTT
TGGCAGGCGACCACGAAGTAACCTTGCGATTGACGGCGAAGCACCATTCGGAAGAAGAAGCGAATAGGTTGATCAGCGTT
ACGGAAAAACTTATTCAAGCCAGAGTGGGCGAGCACTTTTATGGTTACGACGAAGATACCATTTTTTCTGTCCTTTTCGG
GAAAATACAGCATTCCCACTATACACTCAGCAGTGCTGAGAGTTTGACGGGAGGACTGTTCTCTGAAAAGATGACAGCCT
TTACTGGGGCCTCCGAGGTGATAGAGGGAGGTATCGTTTGCTATACCAACGATATCAAACATAAAGTATTAGGTGTGTCT
GAACAAACACTGGAACAGTATGGTGCTGTAAGTGAAGAATGTGCTGCAGAAATGGCTGAACAGGTGAAAAAACTATTTAA
GACAGATATTGGTGTCAGTTTCACCGGAGTTGCAGGACCAGGTATGATGGAAGGGAAGCCGGTAGGTACCGTATTTATTG
GTTTGGCCCTTCCTGATGGCAGAACTATGGTTCATTCTATCAGGCTGGCTGGTGGAAGGGACTCCATCAGGCAAAGAACA
GTGAAATATGGTTGTCATTTCCTGTTAAAGGAGTTATTCAAGAGCAGCTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(7-166)

Competence-damaged protein (CinA)

(264-411)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.756

98.558

0.589
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.464
  cinA Streptococcus mitis SK321

45.823

100

0.462
  cinA Streptococcus pneumoniae Rx1

45.346

100

0.457
  cinA Streptococcus pneumoniae TIGR4

45.346

100

0.457
  cinA Streptococcus pneumoniae R6

45.346

100

0.457
  cinA Streptococcus pneumoniae D39

45.107

100

0.454
  cinA Streptococcus mutans UA159

42.995

99.519

0.428
  cinA Streptococcus suis isolate S10

40.157

91.587

0.368

Multiple sequence alignment