Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABNP42_RS15290 Genome accession   NZ_CP157868
Coordinates   2956376..2957413 (-) Length   345 a.a.
NCBI ID   WP_094912524.1    Uniprot ID   -
Organism   Priestia flexa strain Antcr29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2951376..2962413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP42_RS15270 (ABNP42_15240) - 2952189..2953103 (-) 915 WP_131888178.1 dipeptidase -
  ABNP42_RS15275 (ABNP42_15245) spoVS 2953182..2953442 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  ABNP42_RS15280 (ABNP42_15250) - 2953678..2954475 (-) 798 WP_094912523.1 TIGR00282 family metallophosphoesterase -
  ABNP42_RS15285 (ABNP42_15255) rny 2954535..2956094 (-) 1560 WP_025908598.1 ribonuclease Y -
  ABNP42_RS15290 (ABNP42_15260) recA 2956376..2957413 (-) 1038 WP_094912524.1 recombinase RecA Machinery gene
  ABNP42_RS15295 (ABNP42_15265) cinA 2957665..2958903 (-) 1239 WP_094912624.1 competence/damage-inducible protein A Machinery gene
  ABNP42_RS15300 (ABNP42_15270) pgsA 2958917..2959501 (-) 585 WP_094912525.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABNP42_RS15305 (ABNP42_15275) - 2959589..2960521 (-) 933 WP_311856941.1 helix-turn-helix domain-containing protein -
  ABNP42_RS15310 (ABNP42_15280) - 2960534..2961325 (-) 792 WP_035320247.1 DUF3388 domain-containing protein -
  ABNP42_RS15315 (ABNP42_15285) - 2961721..2961981 (-) 261 WP_094912527.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37497.55 Da        Isoelectric Point: 4.8367

>NTDB_id=1008578 ABNP42_RS15290 WP_094912524.1 2956376..2957413(-) (recA) [Priestia flexa strain Antcr29]
MNDRQAALDMALKQIEKQFGKGSIMKLGEQTERKISTVSSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIVGNKT
RIKVVKNKVAPPFRAAEVDIMYGEGISKEGEILDIASDLDIVQKSGAWYSYNEERLGQGRENAKQFLKENIDIRQEIAGQ
VREYHGLDEAAEQMPEDDGQDELKI

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1008578 ABNP42_RS15290 WP_094912524.1 2956376..2957413(-) (recA) [Priestia flexa strain Antcr29]
GTGAACGATCGTCAAGCAGCCCTTGATATGGCTCTAAAACAAATTGAAAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAGCAAACTGAACGTAAAATTTCAACTGTGTCTAGTGGTTCTCTAGCGTTAGATGTTGCGCTTGGTGTAGGTGGAT
ATCCGCGAGGGCGTATTATTGAAGTTTATGGTCCAGAAAGTTCTGGTAAAACAACAGTTGCACTTCATGCAATTGCAGAA
GTGCAACAGCAGGGCGGACAAGCAGCGTTTATCGATGCTGAGCATGCGCTAGATCCGGTTTATGCACAAAAGCTGGGTGT
TAATATTGATGAGCTTCTTTTATCACAGCCTGATACAGGTGAACAAGCTCTTGAAATTGCTGAAGCGTTGGTTCGTAGTG
GAGCGGTTGACATTCTAGTTATTGACTCTGTTGCAGCACTTGTGCCTAAGGCTGAAATTGAAGGTGAAATGGGAGATTCT
CACGTTGGTTTACAAGCTCGTTTAATGTCTCAAGCACTTCGTAAGCTGTCAGGTGCTATTAATAAATCGAAGACAATTGC
TGTTTTCATTAACCAAATTCGTGAAAAAGTTGGCGTTATGTTTGGTAACCCTGAAACAACGCCAGGTGGACGTGCGCTTA
AGTTTTACTCTTCAGTGCGCCTTGAAGTTCGTCGTGCTGAGCAGTTGAAGCAAGGTAACGATATTGTGGGAAATAAAACA
AGAATTAAAGTTGTCAAAAACAAAGTAGCACCACCATTCCGCGCAGCTGAAGTGGATATTATGTACGGAGAAGGAATTTC
GAAAGAAGGAGAAATTTTAGATATTGCTTCTGATTTAGATATCGTACAAAAAAGTGGAGCTTGGTATTCTTATAACGAAG
AACGTTTAGGTCAAGGCCGTGAGAATGCGAAACAATTCCTAAAAGAGAATATTGATATTCGCCAAGAAATTGCTGGTCAA
GTTCGTGAATATCATGGATTAGATGAAGCGGCAGAGCAAATGCCTGAAGACGATGGTCAAGATGAATTGAAAATTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.939

95.072

0.855
  recA Latilactobacillus sakei subsp. sakei 23K

74.184

97.681

0.725
  recA Streptococcus pneumoniae D39

69.341

100

0.701
  recA Streptococcus pneumoniae Rx1

69.341

100

0.701
  recA Streptococcus pneumoniae R6

69.341

100

0.701
  recA Streptococcus pneumoniae TIGR4

69.341

100

0.701
  recA Streptococcus mitis SK321

69.275

100

0.693
  recA Streptococcus mitis NCTC 12261

71.429

95.362

0.681
  recA Streptococcus mutans UA159

69.578

96.232

0.67
  recA Streptococcus pyogenes NZ131

69.605

95.362

0.664
  recA Lactococcus lactis subsp. cremoris KW2

67.964

96.812

0.658
  recA Neisseria gonorrhoeae strain FA1090

65.549

95.072

0.623
  recA Neisseria gonorrhoeae MS11

65.549

95.072

0.623
  recA Neisseria gonorrhoeae MS11

65.549

95.072

0.623
  recA Ralstonia pseudosolanacearum GMI1000

64.939

95.072

0.617
  recA Acinetobacter baylyi ADP1

60.704

98.841

0.6
  recA Helicobacter pylori strain NCTC11637

61.31

97.391

0.597
  recA Helicobacter pylori 26695

61.31

97.391

0.597
  recA Vibrio cholerae strain A1552

64.174

93.043

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

93.043

0.597
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.117

98.841

0.594
  recA Glaesserella parasuis strain SC1401

63.95

92.464

0.591
  recA Acinetobacter baumannii D1279779

63.24

93.043

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.585

95.072

0.586
  recA Pseudomonas stutzeri DSM 10701

62.813

92.754

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.562

92.754

0.571

Multiple sequence alignment