Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ABNP42_RS15295 Genome accession   NZ_CP157868
Coordinates   2957665..2958903 (-) Length   412 a.a.
NCBI ID   WP_094912624.1    Uniprot ID   -
Organism   Priestia flexa strain Antcr29     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2952665..2963903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP42_RS15275 (ABNP42_15245) spoVS 2953182..2953442 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  ABNP42_RS15280 (ABNP42_15250) - 2953678..2954475 (-) 798 WP_094912523.1 TIGR00282 family metallophosphoesterase -
  ABNP42_RS15285 (ABNP42_15255) rny 2954535..2956094 (-) 1560 WP_025908598.1 ribonuclease Y -
  ABNP42_RS15290 (ABNP42_15260) recA 2956376..2957413 (-) 1038 WP_094912524.1 recombinase RecA Machinery gene
  ABNP42_RS15295 (ABNP42_15265) cinA 2957665..2958903 (-) 1239 WP_094912624.1 competence/damage-inducible protein A Machinery gene
  ABNP42_RS15300 (ABNP42_15270) pgsA 2958917..2959501 (-) 585 WP_094912525.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABNP42_RS15305 (ABNP42_15275) - 2959589..2960521 (-) 933 WP_311856941.1 helix-turn-helix domain-containing protein -
  ABNP42_RS15310 (ABNP42_15280) - 2960534..2961325 (-) 792 WP_035320247.1 DUF3388 domain-containing protein -
  ABNP42_RS15315 (ABNP42_15285) - 2961721..2961981 (-) 261 WP_094912527.1 DUF3243 domain-containing protein -
  ABNP42_RS15320 (ABNP42_15290) - 2962048..2962773 (-) 726 WP_094912528.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45087.26 Da        Isoelectric Point: 4.8154

>NTDB_id=1008579 ABNP42_RS15295 WP_094912624.1 2957665..2958903(-) (cinA) [Priestia flexa strain Antcr29]
MNAEIIGVGSELLLGQIANTNAQYLSKKFAELGINVYYHTVVGDNESRLKEAILTAQKRADLIVFTGGLGPTKDDLTKET
IASELGVSLVTDHKALESIESYFEKTNRTMTPNNRKQAIVLEGATILPNDYGMAPGMGITVNGIDYMLFPGPPKELYPMY
ESYGQAYLAEKLDIKEQIESRVLRFFGIGESQLETDIEDLLDAQTNPTIAPLAADGEVTLRLTAKHEDVAEAHRMLDEVE
KQIMNRVGEFFYGYDLTSLQAELIATLQEQQVTVASAESLTGGLFSGTLTSIPGSGDVVKGSIVAYQTEIKHHVLHVAKE
TLERDGAVSKRCAEEMAVGVKKLTGSDIGISFTGVAGPSKQEDKEVGTVYIGIAFKDEKTRVYPLKLTGSRDGIRKRTVN
YGSYYLLQLLKQ

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=1008579 ABNP42_RS15295 WP_094912624.1 2957665..2958903(-) (cinA) [Priestia flexa strain Antcr29]
ATGAACGCGGAAATTATTGGAGTAGGTTCAGAGCTTTTGCTAGGCCAAATTGCCAATACAAACGCGCAGTACCTATCTAA
AAAATTTGCAGAGCTTGGTATTAATGTATACTATCATACGGTAGTTGGCGATAATGAAAGCCGATTAAAAGAAGCTATTT
TGACCGCTCAAAAGCGTGCGGATTTGATTGTATTTACGGGCGGGCTTGGTCCGACAAAAGACGACCTTACCAAAGAAACA
ATTGCATCAGAACTAGGTGTCTCACTTGTAACAGATCACAAAGCGCTTGAAAGTATTGAATCGTACTTCGAAAAAACCAA
TCGAACAATGACGCCTAATAATAGGAAGCAAGCAATTGTACTTGAAGGTGCAACAATACTGCCAAACGATTATGGAATGG
CACCGGGAATGGGTATTACGGTGAATGGTATTGACTACATGTTGTTTCCTGGTCCGCCAAAGGAACTTTATCCTATGTAT
GAGTCGTATGGACAAGCATATTTAGCAGAAAAGCTAGATATAAAAGAGCAAATTGAGTCTCGTGTTTTACGTTTCTTTGG
AATTGGAGAGTCTCAGTTAGAAACAGATATTGAAGATTTATTAGATGCACAAACAAACCCAACCATTGCACCGTTAGCTG
CTGATGGAGAAGTAACGCTTCGCTTAACGGCTAAGCATGAGGATGTGGCCGAGGCCCATCGAATGCTTGATGAAGTAGAA
AAGCAGATTATGAATCGTGTAGGAGAGTTTTTCTATGGATATGACCTGACGTCTCTACAAGCAGAGCTCATTGCTACGCT
TCAAGAACAACAAGTGACGGTTGCTTCAGCTGAAAGCTTAACTGGCGGCTTGTTCAGTGGGACGCTGACAAGCATTCCTG
GATCTGGAGATGTTGTAAAAGGCAGCATCGTTGCTTATCAAACCGAGATAAAGCACCACGTATTACATGTAGCAAAAGAA
ACCCTAGAGCGAGACGGAGCAGTTAGCAAGAGGTGCGCAGAAGAAATGGCCGTTGGTGTGAAAAAACTGACAGGCTCTGA
TATTGGCATTAGTTTTACAGGTGTCGCTGGTCCGTCTAAGCAAGAAGATAAGGAAGTTGGTACAGTTTATATTGGTATAG
CTTTTAAAGATGAGAAAACACGCGTATATCCGTTAAAGCTTACGGGCAGTCGTGATGGTATTCGTAAACGTACTGTGAAT
TATGGAAGCTATTATCTTTTACAACTTCTGAAACAGTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-165)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.732

99.515

0.604
  cinA Streptococcus pneumoniae TIGR4

46.117

100

0.461
  cinA Streptococcus pneumoniae R6

45.631

100

0.456
  cinA Streptococcus pneumoniae Rx1

45.631

100

0.456
  cinA Streptococcus mitis SK321

45.742

99.757

0.456
  cinA Streptococcus mitis NCTC 12261

45.499

99.757

0.454
  cinA Streptococcus pneumoniae D39

45.388

100

0.454
  cinA Streptococcus mutans UA159

45.113

96.845

0.437
  cinA Streptococcus suis isolate S10

38.462

100

0.388

Multiple sequence alignment