Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABFV80_RS12310 Genome accession   NZ_CP156659
Coordinates   2737705..2738772 (-) Length   355 a.a.
NCBI ID   WP_095552384.1    Uniprot ID   A0A2A2AWU8
Organism   Vandammella animalimorsus strain SK20231019-0001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2732705..2743772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV80_RS12280 (ABFV80_002456) - 2732972..2734114 (-) 1143 WP_347484662.1 homoserine O-acetyltransferase -
  ABFV80_RS12285 (ABFV80_002457) - 2734596..2734949 (+) 354 WP_095542277.1 RNA-binding protein -
  ABFV80_RS12290 (ABFV80_002458) xrtH 2735115..2735675 (+) 561 WP_347484664.1 exosortase H -
  ABFV80_RS12295 (ABFV80_002459) - 2735668..2736483 (+) 816 WP_347484665.1 exosortase H-associated membrane protein -
  ABFV80_RS12300 (ABFV80_002460) - 2736606..2736920 (-) 315 WP_347484667.1 hypothetical protein -
  ABFV80_RS12305 (ABFV80_002461) recX 2737013..2737705 (-) 693 WP_347484668.1 recombination regulator RecX -
  ABFV80_RS12310 (ABFV80_002462) recA 2737705..2738772 (-) 1068 WP_095552384.1 recombinase RecA Machinery gene
  ABFV80_RS12315 (ABFV80_002463) - 2739197..2739898 (+) 702 WP_347484669.1 FHA domain-containing protein -
  ABFV80_RS12320 (ABFV80_002464) pilE 2740227..2740661 (+) 435 WP_347484670.1 pilin Machinery gene
  ABFV80_RS12325 (ABFV80_002465) - 2740721..2742658 (+) 1938 WP_347484671.1 hypothetical protein -
  ABFV80_RS12330 (ABFV80_002466) - 2742686..2743108 (+) 423 WP_238945798.1 pilin -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37855.41 Da        Isoelectric Point: 4.8681

>NTDB_id=1001891 ABFV80_RS12310 WP_095552384.1 2737705..2738772(-) (recA) [Vandammella animalimorsus strain SK20231019-0001]
MNASTANSEKAKALQAALAQIEKQFGKGTIMRLGEEEATQDIQVVSTGSLGLDVALGVGGLPRGRVIEIYGPESSGKTTL
TLQVIAEMQKLGGTCAFVDAEHALDVQYAGKLGVQVKDLLISQPDTGEQALEVVDSLVRSGAVDLVVVDSVAALTPKAEI
EGDMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKKGD
EVIGNETKVKVVKNKVSPPFKTAQFDIMFGSGISREGEIIDMGVLGRIVDKSGAWYSYNGEKIGQGRDNAKEFLKENPEL
AREIENKIRANLGVVAATMAELPDGVDEDGVLQDE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1001891 ABFV80_RS12310 WP_095552384.1 2737705..2738772(-) (recA) [Vandammella animalimorsus strain SK20231019-0001]
ATGAACGCAAGTACCGCGAATTCAGAGAAGGCCAAGGCGCTGCAGGCGGCGCTGGCGCAGATTGAGAAACAGTTTGGCAA
GGGCACCATCATGCGCCTGGGCGAGGAGGAGGCCACGCAGGACATTCAGGTCGTCTCCACCGGCTCACTGGGCCTGGATG
TGGCGCTGGGTGTGGGCGGGCTGCCGCGCGGGCGCGTGATTGAGATTTACGGGCCCGAGTCCTCGGGCAAGACCACGCTG
ACGCTGCAGGTCATTGCCGAGATGCAAAAGCTCGGCGGCACCTGCGCCTTCGTCGATGCCGAGCACGCGTTGGATGTGCA
GTACGCGGGCAAGCTGGGCGTGCAGGTCAAGGATTTGCTCATTTCCCAGCCGGACACGGGCGAGCAGGCGCTGGAGGTGG
TGGACAGCCTGGTGCGCTCGGGCGCGGTCGATCTGGTGGTGGTCGATTCGGTGGCCGCACTGACGCCCAAGGCCGAGATC
GAGGGCGACATGGGCGATGCGCTGCCCGGCCTGCAGGCGCGGCTGATGAGCCAGGCGTTGCGCAAGCTCACGGCCACCAT
CAAGAAGACCAATTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATTGGCGTGATGTTTGGCAGCCCCGAGACCA
CCACCGGCGGCAATGCGCTGAAGTTCTACGCCAGCGTGCGCCTGGACATCCGCCGCACCGGCGCCATCAAGAAGGGCGAT
GAGGTCATCGGCAATGAAACCAAGGTCAAGGTGGTGAAGAACAAGGTCTCGCCGCCGTTCAAGACGGCGCAGTTCGACAT
CATGTTCGGCAGCGGCATCTCACGCGAAGGCGAGATCATCGACATGGGCGTGTTGGGCCGCATCGTGGACAAATCCGGCG
CCTGGTATTCCTATAACGGCGAGAAGATCGGCCAGGGGCGCGACAACGCCAAAGAGTTCCTGAAAGAAAACCCGGAGCTT
GCGCGCGAGATCGAGAACAAGATCCGTGCCAATCTGGGCGTCGTGGCCGCCACCATGGCCGAGCTGCCCGATGGCGTGGA
CGAAGACGGCGTGCTGCAAGACGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A2AWU8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.539

97.746

0.777
  recA Pseudomonas stutzeri DSM 10701

71.513

94.93

0.679
  recA Glaesserella parasuis strain SC1401

67.898

99.155

0.673
  recA Neisseria gonorrhoeae strain FA1090

72.561

92.394

0.67
  recA Neisseria gonorrhoeae MS11

72.561

92.394

0.67
  recA Neisseria gonorrhoeae MS11

72.561

92.394

0.67
  recA Acinetobacter baylyi ADP1

67.93

96.62

0.656
  recA Acinetobacter baumannii D1279779

70.552

91.831

0.648
  recA Vibrio cholerae strain A1552

70.245

91.831

0.645
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.245

91.831

0.645
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.389

92.676

0.634
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.066

94.085

0.631
  recA Helicobacter pylori strain NCTC11637

65.782

95.493

0.628
  recA Helicobacter pylori 26695

65.487

95.493

0.625
  recA Bacillus subtilis subsp. subtilis str. 168

66.055

92.113

0.608
  recA Latilactobacillus sakei subsp. sakei 23K

61.516

96.62

0.594
  recA Streptococcus pyogenes NZ131

62.31

92.676

0.577
  recA Streptococcus pneumoniae Rx1

61.446

93.521

0.575
  recA Streptococcus pneumoniae R6

61.446

93.521

0.575
  recA Streptococcus pneumoniae TIGR4

61.446

93.521

0.575
  recA Streptococcus pneumoniae D39

61.446

93.521

0.575
  recA Streptococcus mitis SK321

61.145

93.521

0.572
  recA Streptococcus mitis NCTC 12261

61.145

93.521

0.572
  recA Streptococcus mutans UA159

61.329

93.239

0.572
  recA Lactococcus lactis subsp. cremoris KW2

60.542

93.521

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.159

93.803

0.555

Multiple sequence alignment