Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ABFV80_RS12320 Genome accession   NZ_CP156659
Coordinates   2740227..2740661 (+) Length   144 a.a.
NCBI ID   WP_347484670.1    Uniprot ID   -
Organism   Vandammella animalimorsus strain SK20231019-0001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2735227..2745661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV80_RS12295 (ABFV80_002459) - 2735668..2736483 (+) 816 WP_347484665.1 exosortase H-associated membrane protein -
  ABFV80_RS12300 (ABFV80_002460) - 2736606..2736920 (-) 315 WP_347484667.1 hypothetical protein -
  ABFV80_RS12305 (ABFV80_002461) recX 2737013..2737705 (-) 693 WP_347484668.1 recombination regulator RecX -
  ABFV80_RS12310 (ABFV80_002462) recA 2737705..2738772 (-) 1068 WP_095552384.1 recombinase RecA Machinery gene
  ABFV80_RS12315 (ABFV80_002463) - 2739197..2739898 (+) 702 WP_347484669.1 FHA domain-containing protein -
  ABFV80_RS12320 (ABFV80_002464) pilE 2740227..2740661 (+) 435 WP_347484670.1 pilin Machinery gene
  ABFV80_RS12325 (ABFV80_002465) - 2740721..2742658 (+) 1938 WP_347484671.1 hypothetical protein -
  ABFV80_RS12330 (ABFV80_002466) - 2742686..2743108 (+) 423 WP_238945798.1 pilin -
  ABFV80_RS12335 (ABFV80_002467) - 2743354..2745114 (+) 1761 WP_347484672.1 hypothetical protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 14749.91 Da        Isoelectric Point: 10.0405

>NTDB_id=1001892 ABFV80_RS12320 WP_347484670.1 2740227..2740661(+) (pilE) [Vandammella animalimorsus strain SK20231019-0001]
MKASLQKGFTLIELMIVVAIIGILAAVALPAYQDYTARSQMAEAFSLAGGQKGTVSEFHTNTGNWPSNNASAGMAAPASI
KGKYVAQVSTNGGKIVATMQATGVSQGIQGKTLTLSGIAGATAGSYDWRCSSNALAKFLPSSCR

Nucleotide


Download         Length: 435 bp        

>NTDB_id=1001892 ABFV80_RS12320 WP_347484670.1 2740227..2740661(+) (pilE) [Vandammella animalimorsus strain SK20231019-0001]
ATGAAAGCATCTCTGCAAAAAGGTTTCACGCTGATCGAACTGATGATCGTTGTGGCCATCATCGGTATTCTGGCTGCTGT
GGCATTGCCTGCATATCAGGATTACACCGCTCGCTCGCAGATGGCTGAAGCCTTCAGTCTGGCTGGCGGCCAGAAGGGGA
CAGTGTCTGAGTTCCACACCAATACGGGTAATTGGCCATCCAATAATGCATCTGCTGGTATGGCGGCACCTGCTTCTATC
AAGGGCAAGTATGTGGCTCAGGTTTCGACTAACGGTGGTAAGATTGTTGCTACGATGCAGGCTACTGGTGTTTCTCAAGG
CATCCAAGGTAAGACTTTGACTTTGAGTGGTATTGCTGGCGCTACTGCTGGCTCCTATGACTGGCGGTGCAGCTCTAACG
CCTTGGCCAAGTTTCTGCCTTCTTCCTGCCGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-29)

Pilin (bacterial filament) (Pilin)

(37-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

52.201

100

0.576
  pilE Neisseria gonorrhoeae strain FA1090

51.899

100

0.569
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

36.508

100

0.479
  pilA/pilAI Pseudomonas stutzeri DSM 10701

43.243

100

0.444
  pilA/pilA1 Eikenella corrodens VA1

39.623

100

0.438
  pilA Acinetobacter baumannii strain A118

42.958

98.611

0.424
  pilA Pseudomonas aeruginosa PAK

39.61

100

0.424
  pilA/pilAII Pseudomonas stutzeri DSM 10701

41.259

99.306

0.41
  pilA2 Legionella pneumophila str. Paris

42.143

97.222

0.41
  pilA2 Legionella pneumophila strain ERS1305867

42.143

97.222

0.41
  comP Acinetobacter baylyi ADP1

37.584

100

0.389

Multiple sequence alignment