Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABFG87_RS12875 Genome accession   NZ_CP156074
Coordinates   2696049..2697107 (-) Length   352 a.a.
NCBI ID   WP_136772355.1    Uniprot ID   -
Organism   Chitiniphilus eburneus strain YS-30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2691049..2702107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFG87_RS12855 - 2691389..2692030 (-) 642 WP_136772359.1 NAD(P)-dependent oxidoreductase -
  ABFG87_RS12860 - 2692141..2693049 (+) 909 WP_136772358.1 LysR family transcriptional regulator -
  ABFG87_RS12865 - 2693033..2695306 (-) 2274 WP_136772357.1 EAL domain-containing protein -
  ABFG87_RS12870 recX 2695517..2695969 (-) 453 WP_211243380.1 recombination regulator RecX -
  ABFG87_RS12875 recA 2696049..2697107 (-) 1059 WP_136772355.1 recombinase RecA Machinery gene
  ABFG87_RS12880 - 2697225..2699057 (-) 1833 WP_169307275.1 ATP-binding protein -
  ABFG87_RS12885 - 2699245..2700504 (+) 1260 WP_136772353.1 D-amino acid dehydrogenase -
  ABFG87_RS12890 guaB 2700574..2702040 (-) 1467 WP_136772352.1 IMP dehydrogenase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37656.20 Da        Isoelectric Point: 5.3086

>NTDB_id=1001640 ABFG87_RS12875 WP_136772355.1 2696049..2697107(-) (recA) [Chitiniphilus eburneus strain YS-30]
MDDNKSKALAAALAQIERQFGKGAIMKMGESQIENDLQVVSTGSLGLDLGLGVGGLPRGRVVEIFGPESSGKTTLCLHVV
AEIQKNGGVAAYIDAENALDPVYAQRLGVNVSDMLISQPDTGEQALEICDMLVRSGGVDIIVIDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTGNIKRTNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAVKKGDEII
GNQTKVKIAKNKVAPPFRVVTFDILYGEGISREGEIIDHGVTHKIVEKSGAWYSYNGNKIGQGLENARQFLKDNPELTQE
IVQKIRSKIGFGEVPIESGGSLADEADAVAAE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1001640 ABFG87_RS12875 WP_136772355.1 2696049..2697107(-) (recA) [Chitiniphilus eburneus strain YS-30]
ATGGACGACAACAAGAGCAAGGCGCTGGCTGCGGCGCTGGCACAGATCGAACGCCAATTCGGCAAGGGCGCCATCATGAA
GATGGGCGAGAGCCAGATCGAGAATGATCTGCAGGTGGTTTCCACCGGCTCGCTCGGCCTGGACCTGGGCCTGGGCGTGG
GCGGCCTGCCACGCGGCCGCGTGGTTGAAATCTTCGGCCCGGAATCGTCCGGCAAAACCACGCTGTGCCTGCATGTCGTG
GCGGAAATCCAGAAGAACGGCGGCGTTGCCGCCTATATCGATGCCGAGAACGCGCTGGACCCCGTCTATGCGCAACGCCT
GGGCGTCAACGTATCCGACATGCTGATTTCCCAGCCCGATACCGGTGAGCAGGCGCTGGAAATCTGCGACATGCTGGTTC
GCTCCGGCGGCGTGGACATCATCGTGATCGACTCGGTTGCCGCGCTGACACCGAAGGCGGAAATCGAAGGGGAAATGGGC
GACCAGCTCCCCGGCCTGCAGGCACGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCACCAACAC
GCTGGTCATCTTCATCAACCAGTTGCGGATGAAGATCGGCGTAATGATGCCCGGCCAGAGCCCGGAAACGACCACCGGCG
GCAACGCGCTGAAGTTCTATGCCTCCGTTCGCCTGGATATCCGCCGCATCGGCGCCGTGAAAAAGGGCGACGAGATCATC
GGCAACCAGACCAAGGTGAAAATCGCCAAGAACAAGGTGGCCCCGCCGTTCCGCGTGGTGACCTTCGACATCCTCTACGG
CGAAGGCATCAGCCGCGAAGGCGAGATCATCGATCACGGCGTTACACACAAGATCGTCGAAAAATCGGGCGCCTGGTATA
GCTACAACGGCAACAAGATCGGCCAGGGCCTGGAAAATGCCCGTCAGTTCCTCAAGGACAACCCCGAACTGACGCAGGAA
ATCGTGCAGAAGATCCGCAGCAAGATCGGTTTCGGCGAAGTGCCGATCGAATCGGGCGGCTCGCTAGCCGATGAGGCGGA
CGCCGTCGCGGCCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

72.334

98.58

0.713
  recA Neisseria gonorrhoeae MS11

72.334

98.58

0.713
  recA Neisseria gonorrhoeae strain FA1090

72.334

98.58

0.713
  recA Ralstonia pseudosolanacearum GMI1000

76.825

89.489

0.687
  recA Pseudomonas stutzeri DSM 10701

69.909

93.466

0.653
  recA Glaesserella parasuis strain SC1401

67.988

93.182

0.634
  recA Acinetobacter baylyi ADP1

66.869

93.466

0.625
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.871

92.614

0.619
  recA Vibrio cholerae strain A1552

66.871

92.614

0.619
  recA Acinetobacter baumannii D1279779

65.046

93.466

0.608
  recA Helicobacter pylori strain NCTC11637

63.664

94.602

0.602
  recA Helicobacter pylori 26695

63.363

94.602

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

93.75

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.562

94.602

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

59.475

97.443

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

61.89

93.182

0.577
  recA Streptococcus mitis NCTC 12261

55.367

100

0.557
  recA Streptococcus mitis SK321

55.085

100

0.554
  recA Streptococcus mutans UA159

57.91

95.17

0.551
  recA Streptococcus pyogenes NZ131

58.133

94.318

0.548
  recA Lactococcus lactis subsp. cremoris KW2

58.308

94.034

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.182

93.75

0.545
  recA Streptococcus pneumoniae D39

57.1

94.034

0.537
  recA Streptococcus pneumoniae R6

57.1

94.034

0.537
  recA Streptococcus pneumoniae TIGR4

57.1

94.034

0.537
  recA Streptococcus pneumoniae Rx1

57.1

94.034

0.537

Multiple sequence alignment