Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QJV29_RS06880 Genome accession   NZ_CP156021
Coordinates   1360195..1361238 (+) Length   347 a.a.
NCBI ID   WP_185637545.1    Uniprot ID   A0A7X1A142
Organism   Listeria swaminathanii strain UTK S2-0008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1355195..1366238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJV29_RS06860 (QJV29_006860) - 1356225..1356956 (+) 732 WP_185637537.1 elongation factor P 5-aminopentanone reductase -
  QJV29_RS06865 (QJV29_006865) - 1357008..1357940 (+) 933 WP_185637539.1 RodZ family helix-turn-helix domain-containing protein -
  QJV29_RS06870 (QJV29_006870) pgsA 1358031..1358609 (+) 579 WP_185637541.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QJV29_RS06875 (QJV29_006875) cinA 1358678..1359925 (+) 1248 WP_311174346.1 competence/damage-inducible protein A Machinery gene
  QJV29_RS06880 (QJV29_006880) recA 1360195..1361238 (+) 1044 WP_185637545.1 recombinase RecA Machinery gene
  QJV29_RS06885 (QJV29_006885) rny 1361538..1363100 (+) 1563 WP_003721904.1 ribonuclease Y -
  QJV29_RS06890 (QJV29_006890) - 1363214..1363711 (+) 498 WP_311174345.1 N-acetyltransferase family protein -
  QJV29_RS06895 (QJV29_006895) - 1363716..1364519 (+) 804 WP_185637549.1 TIGR00282 family metallophosphoesterase -
  QJV29_RS06900 (QJV29_006900) - 1364536..1364898 (+) 363 WP_311174344.1 YlbF family regulator -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37934.02 Da        Isoelectric Point: 4.8079

>NTDB_id=1001269 QJV29_RS06880 WP_185637545.1 1360195..1361238(+) (recA) [Listeria swaminathanii strain UTK S2-0008]
MNDRQAALDQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDA
HVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT
KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGRENAKQYLKEHTDIRDEISKR
VREEYEIDGNKEPLDEKEETLSLLDDE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1001269 QJV29_RS06880 WP_185637545.1 1360195..1361238(+) (recA) [Listeria swaminathanii strain UTK S2-0008]
GTGAATGATCGTCAAGCGGCATTAGACCAAGCATTAAAACAAATTGAAAAACAATTCGGTAAAGGTTCCATTATGAAATT
AGGGGAACATTCAGATCAAAATATATCTACTATTTCTAGTGGTTCATTAGCATTAGATATCGCTTTAGGAGTCGGCGGAT
ACCCTCGCGGACGTATTATTGAAGTATACGGACCAGAGAGTTCTGGTAAAACAACTGTTGCACTTCACGCGATTGCAGAA
GTACAAGCGCAAGGCGGAACAGCAGCATTTATTGATGCAGAACACGCGTTAGATCCAGCGTATGCCAAAAATCTTGGCGT
AAATATTGATGAATTATTACTATCTCAACCAGATACAGGTGAGCAAGCTTTAGAAATTGCAGAAGCATTAGTTCGAAGTG
GTGCAGTTGATATGTTAGTAATTGACTCTGTTGCAGCACTTGTACCACGTGCTGAAATCGAAGGCGAGATGGGTGATGCG
CATGTTGGTTTACAAGCTCGTTTAATGTCCCAAGCATTGCGTAAACTTTCCGGTGTTATTAATAAATCAAAAACCATCGC
TATTTTCATTAACCAAATTCGTGAAAAAGTTGGTGTTATGTTCGGTAACCCAGAAATCACACCAGGTGGACGTGCGCTTA
AATTCTACTCTACTGTTCGTTTAGAAGTAAGACGTGCTGAACAATTAAAACAAGGTACAGATGTAATGGGTAACAAAACG
AAAATCAAAGTTGTAAAAAATAAAGTAGCACCACCATTCCGTATTGCAGAAGTAGACATTATGTACGGCGAAGGTATTTC
GCGTGAAGGTGAGCTTGTTGATATGGCTGCGGAAGTAGATGTAATCAATAAGAGCGGTTCATGGTATTCTTACAAAGAAG
AACGTATCGGCCAAGGTCGTGAAAACGCAAAACAATATCTGAAAGAACATACAGATATTCGTGACGAGATTTCTAAGCGC
GTTCGTGAAGAGTATGAAATTGACGGTAACAAAGAACCTCTTGACGAAAAAGAAGAAACATTAAGCTTACTAGATGACGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X1A142

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.939

95.101

0.798
  recA Latilactobacillus sakei subsp. sakei 23K

77.299

100

0.775
  recA Streptococcus pneumoniae D39

70.783

95.677

0.677
  recA Streptococcus pneumoniae R6

70.783

95.677

0.677
  recA Streptococcus pneumoniae TIGR4

70.783

95.677

0.677
  recA Streptococcus pneumoniae Rx1

70.783

95.677

0.677
  recA Streptococcus mitis NCTC 12261

68.222

98.847

0.674
  recA Streptococcus mutans UA159

66.957

99.424

0.666
  recA Streptococcus mitis SK321

66.282

100

0.663
  recA Streptococcus pyogenes NZ131

69.817

94.524

0.66
  recA Lactococcus lactis subsp. cremoris KW2

68.502

94.236

0.646
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.628

99.135

0.611
  recA Vibrio cholerae strain A1552

61.628

99.135

0.611
  recA Neisseria gonorrhoeae strain FA1090

64.596

92.795

0.599
  recA Neisseria gonorrhoeae MS11

64.596

92.795

0.599
  recA Neisseria gonorrhoeae MS11

64.596

92.795

0.599
  recA Helicobacter pylori strain NCTC11637

59.593

99.135

0.591
  recA Helicobacter pylori 26695

59.593

99.135

0.591
  recA Acinetobacter baylyi ADP1

58.96

99.712

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.006

94.813

0.588
  recA Acinetobacter baumannii D1279779

59.302

99.135

0.588
  recA Ralstonia pseudosolanacearum GMI1000

66.019

89.049

0.588
  recA Pseudomonas stutzeri DSM 10701

62.813

92.219

0.579
  recA Glaesserella parasuis strain SC1401

63.009

91.931

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

92.219

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.912

95.389

0.562

Multiple sequence alignment