Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QJV29_RS06875 Genome accession   NZ_CP156021
Coordinates   1358678..1359925 (+) Length   415 a.a.
NCBI ID   WP_311174346.1    Uniprot ID   -
Organism   Listeria swaminathanii strain UTK S2-0008     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1353678..1364925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJV29_RS06855 (QJV29_006855) - 1354846..1356132 (+) 1287 WP_311174347.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  QJV29_RS06860 (QJV29_006860) - 1356225..1356956 (+) 732 WP_185637537.1 elongation factor P 5-aminopentanone reductase -
  QJV29_RS06865 (QJV29_006865) - 1357008..1357940 (+) 933 WP_185637539.1 RodZ family helix-turn-helix domain-containing protein -
  QJV29_RS06870 (QJV29_006870) pgsA 1358031..1358609 (+) 579 WP_185637541.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QJV29_RS06875 (QJV29_006875) cinA 1358678..1359925 (+) 1248 WP_311174346.1 competence/damage-inducible protein A Machinery gene
  QJV29_RS06880 (QJV29_006880) recA 1360195..1361238 (+) 1044 WP_185637545.1 recombinase RecA Machinery gene
  QJV29_RS06885 (QJV29_006885) rny 1361538..1363100 (+) 1563 WP_003721904.1 ribonuclease Y -
  QJV29_RS06890 (QJV29_006890) - 1363214..1363711 (+) 498 WP_311174345.1 N-acetyltransferase family protein -
  QJV29_RS06895 (QJV29_006895) - 1363716..1364519 (+) 804 WP_185637549.1 TIGR00282 family metallophosphoesterase -
  QJV29_RS06900 (QJV29_006900) - 1364536..1364898 (+) 363 WP_311174344.1 YlbF family regulator -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45625.83 Da        Isoelectric Point: 4.7948

>NTDB_id=1001268 QJV29_RS06875 WP_311174346.1 1358678..1359925(+) (cinA) [Listeria swaminathanii strain UTK S2-0008]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPARLKEVIEIAEKRSDILIFTGGLGPTEDDITKQ
ILAAHLQKQLVEDEYHMHKINEYFASRNKTMTENNKLQAVIIEGSIVLNNDFGFAAGMYLKENQHTYILLPGPPSEMKPM
FTSYANPLLLSESGDQNILESKIMRFFGIGESQLAADLNDLIITQVNPTIATYAGDNEVVVRITATAKTKEEASALVNET
EQEILRRDGTFLYGYGEVSLSELVTAMLLEKELTISAAESFTAGLFQAEIAHFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCNTDIGISFTGVAGPDSLEGHPAGTIWIGLSIKGHDTEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDTNR

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=1001268 QJV29_RS06875 WP_311174346.1 1358678..1359925(+) (cinA) [Listeria swaminathanii strain UTK S2-0008]
ATGGCAAGTGCAGAGATTATTGCGGTAGGTACAGAGTTATTGCTTGGACAAATTGTGAATTCTAATGCTGCGTTCATTTC
ACAAGAATTAGCAGCTGACGGAATATATGTCTATCATCATACGGTGGTTGGAGATAATCCTGCCCGTTTGAAAGAAGTTA
TTGAGATTGCAGAAAAACGCAGCGATATTTTAATCTTTACTGGCGGATTAGGTCCAACAGAGGACGATATTACAAAACAA
ATTTTGGCAGCGCACTTACAAAAACAATTAGTAGAAGATGAGTATCACATGCATAAAATTAACGAATATTTTGCTTCAAG
AAATAAAACGATGACAGAAAACAACAAATTGCAAGCGGTGATTATTGAAGGCTCTATTGTTTTAAATAATGACTTTGGTT
TTGCGGCTGGAATGTATTTAAAAGAAAATCAGCATACCTATATTTTGCTTCCGGGACCACCGTCTGAAATGAAGCCGATG
TTTACGAGTTATGCAAATCCACTTCTTTTAAGCGAAAGCGGCGATCAAAATATTTTAGAATCTAAAATCATGCGCTTTTT
CGGTATTGGAGAATCTCAGTTGGCAGCCGATTTAAACGATTTAATTATCACGCAAGTCAACCCAACTATTGCTACTTATG
CTGGGGATAATGAAGTAGTTGTCCGAATTACGGCAACGGCTAAAACTAAAGAAGAAGCAAGCGCGCTTGTTAATGAAACA
GAACAAGAAATATTGCGCCGCGATGGTACTTTTTTATATGGTTACGGAGAAGTTTCTTTGTCAGAACTAGTGACGGCAAT
GCTATTAGAAAAAGAGCTAACAATCTCTGCAGCAGAAAGTTTTACAGCTGGATTATTCCAAGCAGAAATTGCTCACTTTC
CCGGCATTTCTAAAATTTTCAAAGGTGGTATGGTGACTTACAGTGAGGAAACGAAACAATCTATATTACAAGTATCTCCC
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCTGAATGTGCGAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAACAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGTCCAGACAGCTTAGAAGGACATCCCGCCGGTACGATTTGGATTGGTT
TAAGCATTAAAGGCCACGACACAGAAGCTTTTCAATTTGTTTATGGAAGAGATCGAAATCATAATCGCCGCCGTGCAGTA
AAACAAGGATTTCAGTTAATTAAGCAATTTTTAGATACAAATAGGTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.856

98.554

0.501
  cinA Streptococcus mitis SK321

49.403

100

0.499
  cinA Streptococcus pneumoniae TIGR4

48.81

100

0.494
  cinA Streptococcus mitis NCTC 12261

48.926

100

0.494
  cinA Streptococcus pneumoniae Rx1

48.571

100

0.492
  cinA Streptococcus pneumoniae R6

48.571

100

0.492
  cinA Streptococcus pneumoniae D39

48.333

100

0.489
  cinA Streptococcus mutans UA159

48.317

100

0.484
  cinA Streptococcus suis isolate S10

39.563

99.277

0.393

Multiple sequence alignment