Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01267  |
| T6SS type | Type i3 |
| Strain | Pseudomonas chlororaphis subsp. aureofaciens 30-84 |
| Replicon (RefSeq) | chromosome (NZ_CM001559) |
| Location | 4032346..4058657 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| PCHL3084_RS17645 | 4027618..4028559 | - | 942 | WP_009044325.1 | hypothetical protein | ||
| PCHL3084_RS17650 | 4028705..4030369 | - | 1665 | WP_037005246.1 | SUMF1/EgtB/PvdO family nonheme iron enzyme | ||
| PCHL3084_RS17655 | 4030443..4031630 | - | 1188 | WP_009044327.1 | FtsX-like permease family protein | ||
| PCHL3084_RS17660 | 4031630..4032346 | - | 717 | WP_009044328.1 | ABC transporter ATP-binding protein | ||
| PCHL3084_RS17665 | 4032346..4035411 | - | 3066 | WP_009044329.1 | serine/threonine-protein kinase | ||
| PCHL3084_RS17670 | 4035440..4036165 | - | 726 | WP_009044330.1 | serine/threonine-protein phosphatase | ||
| PCHL3084_RS17675 (tagF) | 4036200..4036892 | - | 693 | WP_009044331.1 | type VI secretion system-associated protein TagF | ||
| T6CP015773 | TssM | PCHL3084_RS17680 (tssM) | 4036889..4040401 | - | 3513 | WP_009044332.1 | type VI secretion system membrane subunit TssM |
| T6CP015774 | TssL | PCHL3084_RS17685 | 4040398..4041765 | - | 1368 | WP_009044333.1 | DotU family type VI secretion system protein |
| T6CP015775 | TssK | PCHL3084_RS17690 (tssK) | 4041772..4043106 | - | 1335 | WP_009044334.1 | type VI secretion system baseplate subunit TssK |
| T6CP015776 | TssJ | PCHL3084_RS17695 (tssJ) | 4043128..4043598 | - | 471 | WP_009044335.1 | type VI secretion system lipoprotein TssJ |
| PCHL3084_RS17700 (tagH) | 4043706..4045109 | - | 1404 | WP_009044336.1 | type VI secretion system-associated FHA domain protein TagH | ||
| T6CP015777 | TssA | PCHL3084_RS17705 (tssA) | 4045475..4046512 | + | 1038 | WP_192814725.1 | type VI secretion system protein TssA |
| T6CP015778 | TssB | PCHL3084_RS17710 (tssB) | 4046577..4047092 | + | 516 | WP_009044338.1 | type VI secretion system contractile sheath small subunit |
| T6CP015779 | TssC | PCHL3084_RS17715 (tssC) | 4047108..4048601 | + | 1494 | WP_009044339.1 | type VI secretion system contractile sheath large subunit |
| T6CP015780 | TssD | PCHL3084_RS17720 | 4048699..4049187 | + | 489 | WP_009044340.1 | type VI secretion system tube protein Hcp |
| PCHL3084_RS17725 | 4049263..4049694 | + | 432 | WP_037005248.1 | type VI secretion system amidase effector protein Tae4 | ||
| PCHL3084_RS17730 | 4049691..4050134 | + | 444 | WP_009044341.1 | hypothetical protein | ||
| T6CP015781 | TssE | PCHL3084_RS17735 (tssE) | 4050298..4050813 | + | 516 | WP_009044342.1 | type VI secretion system baseplate subunit TssE |
| T6CP015782 | TssF | PCHL3084_RS17740 (tssF) | 4050810..4052669 | + | 1860 | WP_009044343.1 | type VI secretion system baseplate subunit TssF |
| T6CP015783 | TssG | PCHL3084_RS17745 (tssG) | 4052633..4053685 | + | 1053 | WP_192814726.1 | type VI secretion system baseplate subunit TssG |
| T6CP015784 | TssH | PCHL3084_RS17750 (tssH) | 4053678..4056401 | + | 2724 | WP_009044345.1 | type VI secretion system ATPase TssH |
| T6CP015785 | TssI | PCHL3084_RS17755 (tssI) | 4056432..4058657 | + | 2226 | WP_009044346.1 | type VI secretion system tip protein VgrG |
| PCHL3084_RS17760 | 4058788..4059234 | + | 447 | WP_009044347.1 | hypothetical protein | ||
| PCHL3084_RS17765 | 4059250..4060362 | + | 1113 | WP_009044348.1 | DUF2169 domain-containing protein | ||
| PCHL3084_RS17770 | 4060362..4061396 | + | 1035 | WP_009044349.1 | 3-oxoacyl-ACP synthase | ||
| PCHL3084_RS17775 | 4061397..4062344 | + | 948 | WP_009044350.1 | DUF4150 domain-containing protein | ||
| PCHL3084_RS17780 | 4062355..4063269 | + | 915 | WP_009044351.1 | hypothetical protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| REG0330 |
Pchl3084_4333 (gacS) | protein | TCS-RR | Pseudomonas chlororaphis subsp. aureofaciens 30-84 | chromosome (NZ_CM001559) | 5113748..5116501 (+) | 496335944 | Pchl3084_3491 (gacA) (↓) |
| REG0331 |
Pchl3084_3491 (gacA) | protein | TCS-HK | Pseudomonas chlororaphis subsp. aureofaciens 30-84 | chromosome (NZ_CM001559) | 4134794..4135435 (-) | 496335231 | Pchl3084_5419 (rsmY)promotor (↓); Pchl3084_1190 (rsmZ)promotor (↓); Pchl3084_1189 (rpoS)transcript (↓) |
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|