Detailed information of component protein


Summary

Component ID T6CP015783
Component protein type TssG
T6SS ID (Type) T6SS01267 insolico (Type i3)
Strain Pseudomonas chlororaphis subsp. aureofaciens 30-84
Replicon chromosome
Sequence Protein sequence (351 a.a.); Nucleotide sequence (1053 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PCHL3084_RS17745
Coordinate (Strand) 4052633..4053685 (+)
NCBI ID WP_192814726.1
RefSeq NZ_CM001559
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 6.3e-108 24..322
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 351 a.a.    

>T6CP015783 NZ_CM001559:4052633-4053685 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssG]
MAGAPRMSTEPLKPLHSIERMADEPWAYDFFQALRRIECEASDRPRIGHSLRLHDDPLRLGQKPDCGFAPSTLASIETGP
EGAAPRIEQLFFGLTGPNGPLPLHLTEYARDRQRNNDDASFTRFLDVFNHRLLCLFYRAWAEARPTVSHDRPDHDYWSMR
LAALSGRGMTSLLGQGPIADSARYHFTGHLAAQTRYPDGLRAILEDYFGVPVSIEEYVGQWLELPQRSQLGVALCSLGSD
LSLGTHVWDRQHKFRIRLGPLSLEQYRRLLPGQESFGELAAWVAEYQGEELDWEVNLLLRHQEVPRIDLDGQTRLGFDTW
LGSPSTDAGDLLLAREYASHTTPSRSSDHE*

  Nucleotide sequence: 1053 bp    

>T6CP015783 NZ_CM001559:4052633-4053685 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssG]
ATGGCAGGCGCACCCCGGATGTCGACCGAACCTCTGAAACCGCTGCACAGCATCGAGCGGATGGCCGACGAGCCCTGGGC
CTACGACTTCTTCCAGGCGCTACGGCGCATCGAGTGCGAGGCCAGCGACCGGCCGCGCATCGGCCATTCCCTGCGCTTGC
ACGACGACCCGCTGCGCCTGGGGCAAAAACCCGACTGCGGCTTCGCCCCCTCGACCCTGGCCAGCATCGAGACCGGCCCC
GAGGGCGCCGCGCCGCGCATCGAGCAGTTGTTCTTCGGCCTCACCGGGCCCAACGGCCCGCTGCCGCTGCACCTGACCGA
ATACGCCCGCGATCGCCAGCGCAACAATGACGACGCCAGCTTCACGCGCTTTCTCGACGTGTTCAATCACCGCCTGTTAT
GCCTGTTCTACCGCGCCTGGGCCGAAGCGCGGCCGACCGTCAGCCATGACCGCCCCGACCACGACTACTGGTCGATGCGC
CTGGCCGCGCTGTCCGGGCGGGGCATGACCAGCCTGCTCGGCCAGGGCCCGATCGCCGACTCGGCGCGTTACCACTTCAC
CGGCCACCTGGCGGCGCAAACCCGCTACCCGGACGGCTTGCGCGCGATCCTGGAAGACTATTTCGGCGTGCCGGTCAGCA
TCGAGGAATACGTCGGCCAGTGGCTGGAGTTGCCGCAGCGCAGCCAGCTGGGGGTGGCACTCTGCTCGCTCGGCAGCGAC
CTGAGCCTGGGCACCCACGTCTGGGATCGCCAGCATAAATTCCGCATCCGCCTGGGGCCTTTGAGCCTGGAGCAATACCG
CCGCCTGCTGCCCGGCCAGGAAAGCTTCGGCGAACTGGCCGCCTGGGTCGCCGAGTACCAGGGCGAGGAGCTGGATTGGG
AAGTCAATCTGCTGCTGCGGCACCAGGAAGTGCCGCGCATCGATCTCGACGGCCAGACCCGCCTGGGCTTCGACACCTGG
CTCGGCAGCCCGTCGACGGATGCCGGCGACCTGCTGCTGGCCCGCGAATACGCCAGCCATACCACCCCCTCAAGGAGCAG
CGATCATGAGTGA