Detailed information of component protein


Summary

Component ID T6CP015785
Component protein type TssI
T6SS ID (Type) T6SS01267 insolico (Type i3)
Strain Pseudomonas chlororaphis subsp. aureofaciens 30-84
Replicon chromosome
Sequence Protein sequence (742 a.a.); Nucleotide sequence (2226 bp)
Reference
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insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PCHL3084_RS17755
Coordinate (Strand) 4056432..4058657 (+)
NCBI ID WP_009044346.1
RefSeq NZ_CM001559
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 2.4e-101 30..330
Phage_base_V PF04717.14 1.5e-14 386..453
Gp5_C PF06715.14 9.5e-05 578..600
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 742 a.a.    

>T6CP015785 NZ_CM001559:4056432-4058657 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssI]
MAITQSTRLVQVDSPLGGEVLLLQGMEGSEELGRLFHYELDLTSEDRAIKFDQLLGKPMGLTLELHGGGKRYFHGIACGC
RQLTGHGQFAGYRVSLRPWFWLLTRTSDCRIFQNKTVPDIIKQVFRDLGFSDFEDNLSGSYREWEYCVQYRETSFDFISR
LMEQEGIYYYFRHEKARHVLVLADAYGAHSTVADYASVPFYPPDQQMRERDHFYDWQLAREVQPGSLALNDYDFQRPGAS
LEVRSSVSRSHSNGDHPLYDYPGEYVQSKDGEHYARTRIQAIHSQFERVQLRGRARGLGCGHLFKLTGYERADQNREYLV
VVARYQIRQELYESGQLDLAEQFTSELDCMDASQAFRPLPLTPLPIVRGPQTARVVGPAGEEIWTDQYGRVKVHFYWDRH
DQSNENSSCWMRVSQAWAGKNWGSVQIPRIGQEVIVGFLEGDPDRPIITGRVYNAEQTVPYELPANATQSGVKSRSSKEG
SPANFNEIRMEDKKGAEQLFIHAEKNQDIEVENDETHWVGHDRSKTIDNDETVHVKHDRTETVDNNETITIGVDRKEKVG
NNETISIGVNRTEDVGSDEKITIGANRTEKVGNNETITIGADRTEKVGANETISIVSNRTEDVGGNETIDITGNRNETVK
GNEGIEINGNQSTQIGQNESRDVSQNRTTNIQQNDSLDVGKNFSLTAGDSITLTTGAASITMKKDGTIMIRGKDITIDGS
GAINIKANRNVVVKGQKILQN*

  Nucleotide sequence: 2226 bp    

>T6CP015785 NZ_CM001559:4056432-4058657 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssI]
ATGGCAATCACGCAAAGCACCCGCCTGGTGCAGGTCGACAGCCCCCTCGGCGGCGAGGTCCTGCTGCTGCAGGGCATGGA
AGGCAGCGAGGAGCTGGGGCGATTGTTCCATTACGAACTGGACCTCACGTCCGAAGACCGGGCGATCAAGTTCGACCAGT
TGCTGGGCAAACCGATGGGCCTGACCCTGGAGCTGCACGGCGGCGGCAAACGCTATTTCCACGGCATTGCCTGCGGCTGC
CGGCAACTGACCGGCCACGGCCAGTTCGCCGGTTATCGGGTCAGCCTGCGGCCGTGGTTCTGGCTGCTCACGCGCACCTC
GGACTGCCGGATTTTCCAGAACAAGACGGTGCCGGACATCATCAAGCAGGTGTTCCGCGACCTCGGCTTCTCCGATTTCG
AAGACAACCTGAGCGGCAGTTACCGCGAGTGGGAATACTGCGTGCAATACCGCGAAACCAGCTTCGACTTCATCAGCCGG
CTGATGGAGCAGGAAGGCATCTACTACTACTTCCGCCATGAGAAAGCGCGGCATGTCCTGGTGCTGGCTGACGCCTACGG
CGCCCACTCGACGGTGGCCGACTACGCCTCGGTGCCCTTCTACCCGCCCGACCAGCAGATGCGCGAGCGCGACCACTTCT
ACGACTGGCAACTGGCGCGGGAAGTCCAGCCGGGCTCGCTGGCGTTGAACGACTACGACTTCCAGCGCCCCGGCGCCAGC
CTCGAAGTGCGCTCCAGCGTGTCGCGCAGCCACAGCAACGGCGACCATCCGCTCTACGACTACCCGGGCGAATACGTCCA
GAGCAAGGATGGCGAGCATTACGCACGCACCCGTATCCAGGCCATTCACAGCCAGTTCGAGCGCGTGCAGTTGCGCGGTC
GTGCGCGTGGCCTGGGCTGCGGGCATCTGTTCAAGCTGACCGGCTACGAGCGCGCCGACCAGAATCGCGAATACCTGGTG
GTGGTCGCACGCTATCAGATCCGCCAGGAGCTTTATGAAAGCGGGCAACTGGACCTGGCCGAGCAGTTCACCAGCGAGCT
GGACTGCATGGATGCCAGCCAGGCCTTCCGCCCCCTGCCCCTGACCCCCCTGCCGATTGTCCGCGGGCCGCAGACCGCCA
GGGTGGTAGGCCCCGCCGGCGAGGAGATCTGGACCGACCAGTATGGCCGGGTCAAGGTGCATTTCTATTGGGATCGCCAC
GACCAGTCCAACGAAAACAGCTCCTGCTGGATGCGCGTGTCACAGGCCTGGGCCGGCAAAAACTGGGGGTCGGTGCAGAT
CCCACGGATCGGCCAGGAAGTGATAGTCGGTTTCCTCGAAGGCGACCCGGATCGCCCGATCATCACCGGCCGCGTCTATA
ACGCCGAACAGACCGTGCCCTACGAGCTGCCGGCCAATGCCACCCAGAGCGGGGTGAAAAGCCGCTCGAGCAAGGAGGGC
TCGCCCGCCAACTTCAATGAAATCCGCATGGAGGACAAAAAGGGCGCGGAGCAGTTGTTCATCCACGCCGAGAAAAACCA
GGACATCGAGGTCGAGAACGACGAGACCCACTGGGTCGGCCACGACCGCAGCAAGACCATCGACAACGACGAAACCGTGC
ACGTCAAACACGACCGCACCGAAACCGTCGATAACAACGAAACCATCACCATCGGCGTGGACCGCAAGGAAAAGGTCGGC
AATAACGAGACCATCTCCATCGGTGTGAACCGTACCGAGGATGTCGGCAGCGACGAGAAAATCACCATCGGCGCCAATCG
CACCGAGAAGGTGGGCAACAACGAGACCATCACCATCGGCGCGGACCGCACGGAAAAGGTCGGTGCCAACGAAACCATCA
GCATCGTCAGCAACCGCACCGAGGACGTGGGCGGCAACGAGACCATCGACATCACCGGCAACCGCAACGAAACGGTCAAG
GGCAACGAAGGTATCGAGATCAACGGCAACCAGAGCACCCAGATCGGCCAGAACGAATCCCGCGACGTATCCCAGAACCG
CACCACCAACATCCAGCAGAACGACAGCCTGGACGTCGGCAAGAACTTCTCCCTCACCGCCGGCGACTCCATCACCCTGA
CCACGGGCGCGGCCAGCATCACCATGAAGAAGGACGGCACCATCATGATTCGCGGCAAGGACATCACCATCGACGGCTCC
GGCGCCATCAACATCAAGGCCAACAGGAACGTGGTGGTCAAAGGCCAGAAGATCCTGCAGAACTAG