Detailed information of component protein
Summary
| Component ID | T6CP015778 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS01267  (Type i3) |
| Strain | Pseudomonas chlororaphis subsp. aureofaciens 30-84 |
| Replicon | chromosome |
| Sequence | Protein sequence (172 a.a.); Nucleotide sequence (516 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PCHL3084_RS17710 |
| Coordinate (Strand) | 4046577..4047092 (+) |
| NCBI ID | WP_009044338.1 |
| RefSeq | NZ_CM001559 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 1.7e-56 | 11..161 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 172 a.a.
>T6CP015778 NZ_CM001559:4046577-4047092 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssB]
MANTSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVMADLVGKPAEPLPAVADRKFLEIDVDNFDSRLKAMKPRV
AFNVPNALTGEGNLSLDVTFESMDDFSPAAVARKVDALNQLLEARTQLANLLTYMDGKTGAEDMIMKAIKDPALLQALAS
APKPTEPEPQA*
MANTSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVMADLVGKPAEPLPAVADRKFLEIDVDNFDSRLKAMKPRV
AFNVPNALTGEGNLSLDVTFESMDDFSPAAVARKVDALNQLLEARTQLANLLTYMDGKTGAEDMIMKAIKDPALLQALAS
APKPTEPEPQA*
Nucleotide sequence: 516 bp
>T6CP015778 NZ_CM001559:4046577-4047092 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssB]
ATGGCTAACACCAGCAGCCAGAAATTCATCGCCCGTAACCGTGCTCCCCGGGTGCAGATCGAGTACGACGTAGAGCTTTA
CGGTGCGGAGAAGAAGGTGCAGTTGCCCTTCGTCATGGGGGTGATGGCCGACCTTGTCGGCAAGCCTGCCGAGCCGCTGC
CGGCGGTGGCCGACCGCAAGTTCCTGGAGATCGATGTCGACAACTTCGACTCGCGGCTCAAGGCCATGAAACCGCGGGTG
GCGTTCAACGTGCCCAATGCCCTGACCGGGGAAGGCAACCTGAGCCTGGACGTCACGTTCGAGAGCATGGACGACTTCAG
CCCTGCCGCGGTGGCGCGCAAGGTCGATGCCCTCAACCAACTGCTCGAAGCCCGCACCCAGCTGGCCAACCTGCTGACCT
ACATGGACGGCAAGACCGGCGCCGAGGACATGATCATGAAGGCGATCAAGGACCCGGCCCTGTTGCAGGCGTTGGCCAGT
GCGCCGAAACCGACCGAACCCGAGCCGCAAGCCTGA
ATGGCTAACACCAGCAGCCAGAAATTCATCGCCCGTAACCGTGCTCCCCGGGTGCAGATCGAGTACGACGTAGAGCTTTA
CGGTGCGGAGAAGAAGGTGCAGTTGCCCTTCGTCATGGGGGTGATGGCCGACCTTGTCGGCAAGCCTGCCGAGCCGCTGC
CGGCGGTGGCCGACCGCAAGTTCCTGGAGATCGATGTCGACAACTTCGACTCGCGGCTCAAGGCCATGAAACCGCGGGTG
GCGTTCAACGTGCCCAATGCCCTGACCGGGGAAGGCAACCTGAGCCTGGACGTCACGTTCGAGAGCATGGACGACTTCAG
CCCTGCCGCGGTGGCGCGCAAGGTCGATGCCCTCAACCAACTGCTCGAAGCCCGCACCCAGCTGGCCAACCTGCTGACCT
ACATGGACGGCAAGACCGGCGCCGAGGACATGATCATGAAGGCGATCAAGGACCCGGCCCTGTTGCAGGCGTTGGCCAGT
GCGCCGAAACCGACCGAACCCGAGCCGCAAGCCTGA