Detailed information of component protein
Summary
Component ID | T6CP015781 |
Component protein type | TssE |
T6SS ID (Type) | T6SS01267 (Type i3) |
Strain | Pseudomonas chlororaphis subsp. aureofaciens 30-84 |
Replicon | chromosome |
Sequence | Protein sequence (172 a.a.); Nucleotide sequence (516 bp) |
Reference | - |
External database links
Locus tag (Gene) | PCHL3084_RS17735 |
Coordinate (Strand) | 4050298..4050813 (+) |
NCBI ID | WP_009044342.1 |
RefSeq | NZ_CM001559 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
GPW_gp25 | PF04965.16 | 9.5e-19 | 39..141 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
- | - |
Protein sequence: 172 a.a.
>T6CP015781 NZ_CM001559:4050298-4050813 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssE]
MAELTLQERLQPSLLDRLTDDDPHNPKEAAERRVMSLTQLKACVLRDLAWLFNTCVLFDPEQAAQMPAGNSVLNFGLPPL
AGHTASSVDVQAIEALFSDTIATFEPRILKGSLKVRARLDGNDMSHNALSFEIEGDLWAEPVPLRLLLSTALDLETGHVK
VTPAEPARRRQ*
MAELTLQERLQPSLLDRLTDDDPHNPKEAAERRVMSLTQLKACVLRDLAWLFNTCVLFDPEQAAQMPAGNSVLNFGLPPL
AGHTASSVDVQAIEALFSDTIATFEPRILKGSLKVRARLDGNDMSHNALSFEIEGDLWAEPVPLRLLLSTALDLETGHVK
VTPAEPARRRQ*
Nucleotide sequence: 516 bp
>T6CP015781 NZ_CM001559:4050298-4050813 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssE]
ATGGCCGAGCTGACTCTGCAAGAACGCCTGCAACCCTCGTTGCTCGATCGCCTGACCGACGACGATCCGCACAACCCGAA
AGAAGCCGCCGAGCGCCGCGTCATGTCGCTGACCCAGCTGAAAGCTTGCGTGCTGCGCGATCTGGCCTGGCTGTTCAACA
CCTGCGTGCTGTTCGATCCGGAGCAGGCCGCGCAGATGCCGGCGGGCAACTCGGTGCTGAATTTCGGCCTGCCGCCCCTG
GCCGGACACACCGCCTCGAGTGTCGATGTTCAGGCCATCGAAGCCTTGTTCAGCGACACCATCGCCACCTTTGAGCCGCG
CATCCTCAAAGGCTCGTTGAAGGTTCGCGCGCGACTCGACGGCAATGACATGAGCCACAACGCCCTGAGCTTCGAGATCG
AGGGCGATCTGTGGGCCGAGCCGGTGCCCCTGCGCTTGCTGCTCAGCACCGCCCTCGACCTGGAAACCGGGCACGTCAAG
GTGACGCCGGCCGAGCCCGCCAGGAGACGCCAATGA
ATGGCCGAGCTGACTCTGCAAGAACGCCTGCAACCCTCGTTGCTCGATCGCCTGACCGACGACGATCCGCACAACCCGAA
AGAAGCCGCCGAGCGCCGCGTCATGTCGCTGACCCAGCTGAAAGCTTGCGTGCTGCGCGATCTGGCCTGGCTGTTCAACA
CCTGCGTGCTGTTCGATCCGGAGCAGGCCGCGCAGATGCCGGCGGGCAACTCGGTGCTGAATTTCGGCCTGCCGCCCCTG
GCCGGACACACCGCCTCGAGTGTCGATGTTCAGGCCATCGAAGCCTTGTTCAGCGACACCATCGCCACCTTTGAGCCGCG
CATCCTCAAAGGCTCGTTGAAGGTTCGCGCGCGACTCGACGGCAATGACATGAGCCACAACGCCCTGAGCTTCGAGATCG
AGGGCGATCTGTGGGCCGAGCCGGTGCCCCTGCGCTTGCTGCTCAGCACCGCCCTCGACCTGGAAACCGGGCACGTCAAG
GTGACGCCGGCCGAGCCCGCCAGGAGACGCCAATGA