Detailed information of component protein


Summary

Component ID T6CP015777
Component protein type TssA
T6SS ID (Type) T6SS01267 insolico (Type i3)
Strain Pseudomonas chlororaphis subsp. aureofaciens 30-84
Replicon chromosome
Sequence Protein sequence (346 a.a.); Nucleotide sequence (1038 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PCHL3084_RS17705
Coordinate (Strand) 4045475..4046512 (+)
NCBI ID WP_192814725.1
RefSeq NZ_CM001559
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 3.4e-36 13..136
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 346 a.a.    

>T6CP015777 NZ_CM001559:4045475-4046512 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssA]
MEITSVVDVQRLLETISPDSPCGGDLEYDAAFLELERAAQGQPERQMGDAVLPAAPPEWRQVRDLCVELFTRSKDLRIAN
YFLQSAIALQGLPGLVQGLQLIQQLLAQYWDDLHPKLDAEDNNDPTFRINALAGLNAEPVIRLLWGMPLISSRAFGSIGL
RAALNAAGLQRFASESLSPDQLGAAFQDCAGEQLEACRAALNDAHGTLLTIEREVNERVGSTHGADLGTIKQLLRHAVQI
IAEHAPQPGVSGAVAQVGEPVDAAMSPAPGAAAPRIAGEIGSRDDVLRSLDRILGYYARHEPSSPVPVLLSRAKRLVSAD
FATIVSNLIPDGFSQFEKLRGPEGE*

  Nucleotide sequence: 1038 bp    

>T6CP015777 NZ_CM001559:4045475-4046512 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssA]
ATGGAGATCACGTCCGTGGTGGATGTACAGCGCTTGTTGGAAACCATTTCCCCCGACTCCCCCTGTGGCGGCGACCTCGA
GTACGACGCCGCCTTTCTCGAGCTTGAACGCGCGGCGCAAGGCCAACCCGAACGGCAGATGGGCGATGCCGTGTTACCCG
CCGCACCGCCGGAATGGCGCCAGGTCCGCGACCTCTGCGTCGAACTGTTCACGCGCAGCAAAGACCTGCGCATCGCCAAC
TACTTCCTGCAAAGCGCCATTGCCCTGCAAGGCTTGCCCGGCCTGGTGCAAGGGCTACAGCTGATCCAGCAACTGCTCGC
GCAGTATTGGGATGACCTGCATCCCAAGCTGGATGCAGAAGATAACAATGACCCCACCTTTCGGATCAACGCCCTCGCCG
GCCTCAACGCCGAGCCGGTCATTCGCCTGCTCTGGGGCATGCCGCTGATCAGCTCGCGGGCATTTGGCAGCATCGGCCTT
CGGGCCGCGCTGAATGCCGCGGGCTTGCAGCGCTTCGCCAGTGAAAGCCTCAGCCCGGACCAGCTCGGCGCGGCCTTTCA
GGACTGCGCGGGCGAACAGCTCGAGGCCTGCCGCGCCGCCCTGAACGATGCTCATGGCACGCTGTTGACCATAGAGCGCG
AGGTCAACGAACGGGTCGGTTCCACCCACGGCGCGGACCTGGGCACGATCAAGCAACTGCTTCGGCATGCCGTGCAAATC
ATCGCCGAGCACGCCCCTCAGCCAGGCGTTTCCGGTGCTGTCGCGCAGGTCGGCGAGCCTGTCGATGCCGCCATGTCCCC
GGCCCCCGGCGCCGCCGCGCCGCGCATCGCCGGCGAGATCGGCAGCCGTGACGATGTGCTGCGCAGCCTCGACCGGATCC
TCGGTTATTACGCCAGGCACGAGCCCTCAAGCCCCGTGCCGGTGCTCCTGAGCCGCGCCAAGAGACTGGTCAGCGCCGAT
TTCGCCACCATTGTGAGCAACCTGATTCCGGACGGCTTTTCCCAGTTCGAAAAATTGCGCGGGCCCGAGGGTGAATAG