Detailed information of component protein
Summary
| Component ID | T6CP015773 |
| Component protein type | TssM |
| T6SS ID (Type) | T6SS01267  (Type i3) |
| Strain | Pseudomonas chlororaphis subsp. aureofaciens 30-84 |
| Replicon | chromosome |
| Sequence | Protein sequence (1171 a.a.); Nucleotide sequence (3513 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PCHL3084_RS17680 |
| Coordinate (Strand) | 4036889..4040401 (-) |
| NCBI ID | WP_009044332.1 |
| RefSeq | NZ_CM001559 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| IcmF-related_N | PF14331.8 | 1.1e-99 | 194..452 |
| IcmF-related | PF06761.14 | 1e-76 | 503..797 |
| IcmF_C | PF06744.14 | 1.9e-28 | 1045..1151 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 1171 a.a.
>T6CP015773 NZ_CM001559:c4040401-4036889 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssM]
VKAFINFLVRWVVPLLGLLALSLVIWFLGPLIIVAAYEPLAPAAVRWALIGLLFLAWIGVRVLRIVQARRNAAKVMQGLA
AVAPDAASVATAEELAALKQRMDEALLLLKRSKLGGNERRNLYELPWYVIIGPPGSGKTTALVNSGMHFPLAEQMGSGAI
RGVGGTRNCDWWFTDEAVLLDTAGRYTTQDSHAAVDKAAWLGFLDLLKNQRKRRPIDGVFVAISLSDLLLGSEAERSAHA
RAIRTRVQELYSQLGVRFPIYVMLTKFDLVPGFMEFFDALSKEERAQVWGVTFALDDGKSPQGPLARFDEEFTALEARLT
ERLVERLQQERDPNRRDLIYAFIQQFAALRHNLSSFLEGVFKPNPYEERALLRGLYFTSGTQEGSPIDRLIGSMAQSMNL
DRQHLARQTGTGRSYFITRLFRDVAFGERGLVGSNPKVERRHRWINRGVLAASALVLLTVTAIWVASYRANQAYIAEVDA
RLAPLKGQVEALSPAQREVLAVLPLLNAVRHVADNSLAWAEGYGLFQGDMLGAEAASVYRKLLIAVLAPRLLTRIEEQLR
SGGNTEFLYEGLKVYLMLASAEHYDADAIKTWINLDWDHSLPRDLAPEQRLALAEHLNALFVHKPPPARLDEALLADLRR
QLQQMSVAQRVYNRVKRQKLPEGVADFRLSEAAGRDAALVFTRKSGKPLSDPLSGFYTYRGYRQAFMVASLSQSGALAEE
QWVLGRPLNDNQDVASLALEVRALYFQDFLNQWETLLGDLDFVAINGIAQAADVLRVLSGPNSPLKKLLAAVAKETNLQQ
EDRLLAEKLKAADGTVDKLKQQLGSLVGQAAQEDSSATSQVDPISARFAELNSLVTTHGDGPAPIDDLLAQLNELYVQVS
AMSGASGDALLGEAKNQAVATASRVKLGAERQPPLVQKLVNSVVSATTGSMMGSIRTQLNAAWISEVVNVYRQSLAGRYP
MVNSSSREATLEDFGNFFGVGGVMDNYFRKYLQAYVNTSTSNWRWQPGAAEKLGIGPGVLQTFQRAAAIRDAYFRAGGTQ
PAVRFELKPVAMDASISQFLLDLDGQQLSYDHGPSRPMAMQWPSPNSLGVVRLSVTPPTSAGRSGLTLEGPWAWFRLLEQ
SDLTQGNAPDRFTLRMRVDSASISCELRASSAFNPFKGRLLSGFSLPERL*
VKAFINFLVRWVVPLLGLLALSLVIWFLGPLIIVAAYEPLAPAAVRWALIGLLFLAWIGVRVLRIVQARRNAAKVMQGLA
AVAPDAASVATAEELAALKQRMDEALLLLKRSKLGGNERRNLYELPWYVIIGPPGSGKTTALVNSGMHFPLAEQMGSGAI
RGVGGTRNCDWWFTDEAVLLDTAGRYTTQDSHAAVDKAAWLGFLDLLKNQRKRRPIDGVFVAISLSDLLLGSEAERSAHA
RAIRTRVQELYSQLGVRFPIYVMLTKFDLVPGFMEFFDALSKEERAQVWGVTFALDDGKSPQGPLARFDEEFTALEARLT
ERLVERLQQERDPNRRDLIYAFIQQFAALRHNLSSFLEGVFKPNPYEERALLRGLYFTSGTQEGSPIDRLIGSMAQSMNL
DRQHLARQTGTGRSYFITRLFRDVAFGERGLVGSNPKVERRHRWINRGVLAASALVLLTVTAIWVASYRANQAYIAEVDA
RLAPLKGQVEALSPAQREVLAVLPLLNAVRHVADNSLAWAEGYGLFQGDMLGAEAASVYRKLLIAVLAPRLLTRIEEQLR
SGGNTEFLYEGLKVYLMLASAEHYDADAIKTWINLDWDHSLPRDLAPEQRLALAEHLNALFVHKPPPARLDEALLADLRR
QLQQMSVAQRVYNRVKRQKLPEGVADFRLSEAAGRDAALVFTRKSGKPLSDPLSGFYTYRGYRQAFMVASLSQSGALAEE
QWVLGRPLNDNQDVASLALEVRALYFQDFLNQWETLLGDLDFVAINGIAQAADVLRVLSGPNSPLKKLLAAVAKETNLQQ
EDRLLAEKLKAADGTVDKLKQQLGSLVGQAAQEDSSATSQVDPISARFAELNSLVTTHGDGPAPIDDLLAQLNELYVQVS
AMSGASGDALLGEAKNQAVATASRVKLGAERQPPLVQKLVNSVVSATTGSMMGSIRTQLNAAWISEVVNVYRQSLAGRYP
MVNSSSREATLEDFGNFFGVGGVMDNYFRKYLQAYVNTSTSNWRWQPGAAEKLGIGPGVLQTFQRAAAIRDAYFRAGGTQ
PAVRFELKPVAMDASISQFLLDLDGQQLSYDHGPSRPMAMQWPSPNSLGVVRLSVTPPTSAGRSGLTLEGPWAWFRLLEQ
SDLTQGNAPDRFTLRMRVDSASISCELRASSAFNPFKGRLLSGFSLPERL*
Nucleotide sequence: 3513 bp
>T6CP015773 NZ_CM001559:c4040401-4036889 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssM]
GTGAAGGCCTTTATCAATTTCCTGGTGCGCTGGGTGGTGCCGCTGCTCGGCCTGCTCGCCCTGAGCCTGGTGATCTGGTT
CCTCGGTCCGCTGATCATCGTCGCGGCCTATGAACCCTTGGCCCCGGCGGCCGTACGCTGGGCGCTGATCGGCCTGTTGT
TTCTGGCCTGGATCGGGGTGCGCGTATTGCGCATCGTCCAGGCCCGGCGCAACGCCGCCAAGGTCATGCAAGGCCTGGCG
GCGGTAGCGCCGGATGCGGCCAGCGTCGCCACCGCCGAAGAGCTGGCGGCCCTCAAGCAACGCATGGACGAAGCACTGCT
ATTGCTCAAGCGCAGCAAGCTCGGCGGTAACGAGCGGCGCAACCTTTACGAGCTGCCCTGGTACGTGATCATCGGCCCGC
CGGGCTCGGGCAAGACCACCGCGCTGGTCAATTCCGGGATGCACTTTCCGCTGGCCGAACAGATGGGCAGTGGGGCGATC
CGCGGAGTCGGCGGTACGCGCAACTGCGACTGGTGGTTCACCGACGAAGCGGTGCTGCTGGACACCGCCGGGCGCTACAC
CACCCAGGACAGCCATGCGGCGGTGGACAAGGCGGCCTGGCTGGGCTTTCTCGACCTGTTGAAGAACCAGCGCAAGCGCC
GGCCGATCGATGGCGTCTTCGTCGCCATCAGCCTGTCCGACCTGCTATTGGGCAGCGAGGCCGAGCGCAGCGCCCATGCC
CGGGCCATCCGCACGCGGGTGCAGGAGTTGTATAGCCAGCTCGGTGTGCGCTTCCCGATCTACGTGATGCTTACCAAGTT
CGACCTGGTGCCGGGGTTCATGGAGTTCTTCGACGCGCTGAGCAAGGAGGAGCGCGCGCAGGTCTGGGGCGTCACCTTTG
CTCTGGACGATGGCAAGAGTCCCCAAGGCCCGCTGGCCCGTTTCGACGAGGAATTCACCGCCCTCGAGGCGCGTCTTACC
GAGCGCTTGGTCGAGCGCCTGCAACAGGAGCGCGACCCCAACCGACGCGATCTGATCTACGCCTTCATCCAGCAGTTCGC
GGCGTTGCGTCACAACCTGTCGTCCTTCCTCGAGGGGGTATTCAAGCCCAATCCCTATGAAGAGCGGGCGCTGTTGCGCG
GGCTGTACTTCACCAGCGGCACCCAGGAAGGCAGCCCCATCGACCGTCTGATCGGCAGCATGGCGCAAAGCATGAACCTG
GATCGCCAGCACCTGGCGCGCCAGACCGGCACGGGCCGCAGTTACTTCATTACCCGCTTGTTCCGCGATGTCGCCTTCGG
CGAGCGCGGCCTGGTCGGCAGCAACCCCAAGGTCGAGCGCCGGCATCGTTGGATCAATCGTGGCGTACTCGCCGCCAGTG
CCTTGGTCTTGCTGACGGTGACGGCCATCTGGGTCGCCAGCTACCGTGCCAACCAGGCCTATATCGCCGAGGTGGACGCA
CGCCTGGCGCCGCTCAAGGGGCAGGTCGAAGCGCTCAGCCCGGCGCAGCGCGAGGTCTTGGCCGTGCTGCCACTGCTCAA
CGCCGTTCGCCATGTCGCCGACAATTCGCTGGCCTGGGCCGAAGGCTATGGCCTGTTCCAGGGCGACATGCTCGGCGCCG
AAGCCGCCAGCGTGTACCGCAAGCTGCTGATCGCGGTGCTCGCGCCGCGTCTGCTGACGCGCATCGAGGAACAGTTGCGC
AGCGGCGGCAACACCGAGTTTCTCTACGAAGGCCTCAAGGTCTACCTGATGCTGGCCAGCGCCGAGCACTATGACGCCGA
TGCCATCAAGACCTGGATCAACCTCGACTGGGACCACAGCCTGCCGCGCGACCTGGCCCCGGAACAGCGCCTGGCCCTGG
CCGAGCATCTCAATGCGCTGTTCGTCCACAAGCCACCACCGGCGAGGCTGGATGAAGCGCTGCTGGCCGACCTGCGTCGG
CAGTTGCAACAGATGTCCGTGGCGCAGCGGGTCTACAACCGGGTGAAACGCCAGAAGCTGCCCGAGGGCGTAGCGGATTT
TCGCCTCAGCGAAGCGGCCGGGCGCGACGCCGCCCTGGTGTTCACGCGCAAGAGCGGCAAGCCGCTGAGCGATCCGTTAT
CCGGTTTCTATACCTACCGCGGCTACCGTCAGGCGTTCATGGTCGCCAGCCTCAGCCAGTCCGGCGCCCTGGCCGAGGAG
CAATGGGTACTCGGCCGGCCATTGAACGACAACCAGGATGTCGCCAGCCTGGCCCTGGAGGTGCGTGCCCTGTACTTCCA
GGATTTCCTCAACCAATGGGAAACACTGCTCGGCGATCTCGACTTCGTCGCGATCAACGGCATCGCCCAGGCCGCCGATG
TGCTGCGGGTGCTCTCCGGGCCAAACTCGCCACTGAAGAAACTGCTCGCTGCGGTGGCCAAGGAAACCAACCTGCAACAA
GAGGATCGCCTGCTGGCCGAGAAGCTCAAGGCCGCCGACGGCACCGTGGACAAACTCAAGCAGCAGCTCGGCTCGCTGGT
CGGCCAAGCGGCCCAGGAAGATTCGTCGGCAACCTCGCAGGTCGATCCCATCAGCGCGCGTTTCGCCGAGCTCAATAGCC
TGGTGACCACTCATGGGGATGGGCCCGCGCCGATCGACGACCTGCTGGCCCAGCTCAATGAGCTGTATGTGCAGGTCAGC
GCCATGAGCGGCGCCAGCGGCGACGCCTTGCTGGGCGAGGCGAAGAACCAGGCGGTGGCCACCGCATCGCGGGTCAAGCT
CGGCGCCGAGCGTCAGCCGCCACTGGTGCAGAAGCTGGTCAACTCGGTGGTCAGCGCCACCACTGGCAGCATGATGGGCA
GCATCCGCACCCAGCTGAACGCGGCCTGGATCAGTGAGGTGGTGAATGTCTACCGCCAGTCCCTGGCTGGCCGTTACCCC
ATGGTCAACTCCAGTTCGCGGGAGGCCACCCTGGAGGACTTCGGCAACTTCTTCGGCGTGGGCGGGGTGATGGACAACTA
CTTTCGCAAGTACCTGCAAGCCTACGTCAACACCTCGACCAGCAACTGGCGCTGGCAGCCGGGCGCCGCGGAAAAGCTCG
GCATAGGTCCGGGCGTGCTGCAAACCTTCCAACGCGCCGCGGCCATTCGCGATGCCTACTTCCGCGCCGGAGGCACCCAA
CCGGCGGTACGCTTCGAGCTCAAGCCCGTGGCCATGGATGCCTCCATCAGCCAGTTCCTGCTCGATCTGGACGGCCAGCA
GCTCAGCTACGACCATGGCCCCAGCCGGCCGATGGCGATGCAATGGCCCAGCCCCAACAGCCTGGGGGTGGTGCGCCTGT
CCGTCACGCCGCCCACCAGCGCCGGTCGTTCGGGACTGACCCTGGAGGGGCCCTGGGCCTGGTTTCGCTTGCTGGAACAG
TCCGACCTGACCCAGGGCAACGCCCCGGACCGCTTCACCCTGCGCATGCGCGTCGACAGCGCGAGCATCTCCTGCGAGCT
GCGCGCCAGCAGCGCGTTCAACCCGTTCAAGGGCCGGCTGTTGTCCGGCTTCAGCCTGCCGGAGCGCTTGTGA
GTGAAGGCCTTTATCAATTTCCTGGTGCGCTGGGTGGTGCCGCTGCTCGGCCTGCTCGCCCTGAGCCTGGTGATCTGGTT
CCTCGGTCCGCTGATCATCGTCGCGGCCTATGAACCCTTGGCCCCGGCGGCCGTACGCTGGGCGCTGATCGGCCTGTTGT
TTCTGGCCTGGATCGGGGTGCGCGTATTGCGCATCGTCCAGGCCCGGCGCAACGCCGCCAAGGTCATGCAAGGCCTGGCG
GCGGTAGCGCCGGATGCGGCCAGCGTCGCCACCGCCGAAGAGCTGGCGGCCCTCAAGCAACGCATGGACGAAGCACTGCT
ATTGCTCAAGCGCAGCAAGCTCGGCGGTAACGAGCGGCGCAACCTTTACGAGCTGCCCTGGTACGTGATCATCGGCCCGC
CGGGCTCGGGCAAGACCACCGCGCTGGTCAATTCCGGGATGCACTTTCCGCTGGCCGAACAGATGGGCAGTGGGGCGATC
CGCGGAGTCGGCGGTACGCGCAACTGCGACTGGTGGTTCACCGACGAAGCGGTGCTGCTGGACACCGCCGGGCGCTACAC
CACCCAGGACAGCCATGCGGCGGTGGACAAGGCGGCCTGGCTGGGCTTTCTCGACCTGTTGAAGAACCAGCGCAAGCGCC
GGCCGATCGATGGCGTCTTCGTCGCCATCAGCCTGTCCGACCTGCTATTGGGCAGCGAGGCCGAGCGCAGCGCCCATGCC
CGGGCCATCCGCACGCGGGTGCAGGAGTTGTATAGCCAGCTCGGTGTGCGCTTCCCGATCTACGTGATGCTTACCAAGTT
CGACCTGGTGCCGGGGTTCATGGAGTTCTTCGACGCGCTGAGCAAGGAGGAGCGCGCGCAGGTCTGGGGCGTCACCTTTG
CTCTGGACGATGGCAAGAGTCCCCAAGGCCCGCTGGCCCGTTTCGACGAGGAATTCACCGCCCTCGAGGCGCGTCTTACC
GAGCGCTTGGTCGAGCGCCTGCAACAGGAGCGCGACCCCAACCGACGCGATCTGATCTACGCCTTCATCCAGCAGTTCGC
GGCGTTGCGTCACAACCTGTCGTCCTTCCTCGAGGGGGTATTCAAGCCCAATCCCTATGAAGAGCGGGCGCTGTTGCGCG
GGCTGTACTTCACCAGCGGCACCCAGGAAGGCAGCCCCATCGACCGTCTGATCGGCAGCATGGCGCAAAGCATGAACCTG
GATCGCCAGCACCTGGCGCGCCAGACCGGCACGGGCCGCAGTTACTTCATTACCCGCTTGTTCCGCGATGTCGCCTTCGG
CGAGCGCGGCCTGGTCGGCAGCAACCCCAAGGTCGAGCGCCGGCATCGTTGGATCAATCGTGGCGTACTCGCCGCCAGTG
CCTTGGTCTTGCTGACGGTGACGGCCATCTGGGTCGCCAGCTACCGTGCCAACCAGGCCTATATCGCCGAGGTGGACGCA
CGCCTGGCGCCGCTCAAGGGGCAGGTCGAAGCGCTCAGCCCGGCGCAGCGCGAGGTCTTGGCCGTGCTGCCACTGCTCAA
CGCCGTTCGCCATGTCGCCGACAATTCGCTGGCCTGGGCCGAAGGCTATGGCCTGTTCCAGGGCGACATGCTCGGCGCCG
AAGCCGCCAGCGTGTACCGCAAGCTGCTGATCGCGGTGCTCGCGCCGCGTCTGCTGACGCGCATCGAGGAACAGTTGCGC
AGCGGCGGCAACACCGAGTTTCTCTACGAAGGCCTCAAGGTCTACCTGATGCTGGCCAGCGCCGAGCACTATGACGCCGA
TGCCATCAAGACCTGGATCAACCTCGACTGGGACCACAGCCTGCCGCGCGACCTGGCCCCGGAACAGCGCCTGGCCCTGG
CCGAGCATCTCAATGCGCTGTTCGTCCACAAGCCACCACCGGCGAGGCTGGATGAAGCGCTGCTGGCCGACCTGCGTCGG
CAGTTGCAACAGATGTCCGTGGCGCAGCGGGTCTACAACCGGGTGAAACGCCAGAAGCTGCCCGAGGGCGTAGCGGATTT
TCGCCTCAGCGAAGCGGCCGGGCGCGACGCCGCCCTGGTGTTCACGCGCAAGAGCGGCAAGCCGCTGAGCGATCCGTTAT
CCGGTTTCTATACCTACCGCGGCTACCGTCAGGCGTTCATGGTCGCCAGCCTCAGCCAGTCCGGCGCCCTGGCCGAGGAG
CAATGGGTACTCGGCCGGCCATTGAACGACAACCAGGATGTCGCCAGCCTGGCCCTGGAGGTGCGTGCCCTGTACTTCCA
GGATTTCCTCAACCAATGGGAAACACTGCTCGGCGATCTCGACTTCGTCGCGATCAACGGCATCGCCCAGGCCGCCGATG
TGCTGCGGGTGCTCTCCGGGCCAAACTCGCCACTGAAGAAACTGCTCGCTGCGGTGGCCAAGGAAACCAACCTGCAACAA
GAGGATCGCCTGCTGGCCGAGAAGCTCAAGGCCGCCGACGGCACCGTGGACAAACTCAAGCAGCAGCTCGGCTCGCTGGT
CGGCCAAGCGGCCCAGGAAGATTCGTCGGCAACCTCGCAGGTCGATCCCATCAGCGCGCGTTTCGCCGAGCTCAATAGCC
TGGTGACCACTCATGGGGATGGGCCCGCGCCGATCGACGACCTGCTGGCCCAGCTCAATGAGCTGTATGTGCAGGTCAGC
GCCATGAGCGGCGCCAGCGGCGACGCCTTGCTGGGCGAGGCGAAGAACCAGGCGGTGGCCACCGCATCGCGGGTCAAGCT
CGGCGCCGAGCGTCAGCCGCCACTGGTGCAGAAGCTGGTCAACTCGGTGGTCAGCGCCACCACTGGCAGCATGATGGGCA
GCATCCGCACCCAGCTGAACGCGGCCTGGATCAGTGAGGTGGTGAATGTCTACCGCCAGTCCCTGGCTGGCCGTTACCCC
ATGGTCAACTCCAGTTCGCGGGAGGCCACCCTGGAGGACTTCGGCAACTTCTTCGGCGTGGGCGGGGTGATGGACAACTA
CTTTCGCAAGTACCTGCAAGCCTACGTCAACACCTCGACCAGCAACTGGCGCTGGCAGCCGGGCGCCGCGGAAAAGCTCG
GCATAGGTCCGGGCGTGCTGCAAACCTTCCAACGCGCCGCGGCCATTCGCGATGCCTACTTCCGCGCCGGAGGCACCCAA
CCGGCGGTACGCTTCGAGCTCAAGCCCGTGGCCATGGATGCCTCCATCAGCCAGTTCCTGCTCGATCTGGACGGCCAGCA
GCTCAGCTACGACCATGGCCCCAGCCGGCCGATGGCGATGCAATGGCCCAGCCCCAACAGCCTGGGGGTGGTGCGCCTGT
CCGTCACGCCGCCCACCAGCGCCGGTCGTTCGGGACTGACCCTGGAGGGGCCCTGGGCCTGGTTTCGCTTGCTGGAACAG
TCCGACCTGACCCAGGGCAACGCCCCGGACCGCTTCACCCTGCGCATGCGCGTCGACAGCGCGAGCATCTCCTGCGAGCT
GCGCGCCAGCAGCGCGTTCAACCCGTTCAAGGGCCGGCTGTTGTCCGGCTTCAGCCTGCCGGAGCGCTTGTGA