Detailed information of component protein


Summary

Component ID T6CP015779
Component protein type TssC
T6SS ID (Type) T6SS01267 insolico (Type i3)
Strain Pseudomonas chlororaphis subsp. aureofaciens 30-84
Replicon chromosome
Sequence Protein sequence (498 a.a.); Nucleotide sequence (1494 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PCHL3084_RS17715
Coordinate (Strand) 4047108..4048601 (+)
NCBI ID WP_009044339.1
RefSeq NZ_CM001559
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.3e-132 68..370
VipB_2 PF18945.2 2.9e-43 380..491
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 498 a.a.    

>T6CP015779 NZ_CM001559:4047108-4048601 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssC]
MAELMKDPQAQADAATAPSDFAALLLQEFKPKTEHAREAVESAVRTLAEQALSKTELISNDAIKSIESIIAAIDAKLTAQ
VNLIMHHPDFQQLESAWRGLSYLVNNTETDEQLKIRVMSIAKGDLHKTLKKFKGTAWDQSPIFKKMYEEEYGQFGGEPFG
CLVGDYYFDQSSPDVELLGELAKVCAAMHAPFISAASPTVMGMGSWQELSNPRDLTKIFTTPEYAAWRSLRDSEDSRYIG
LTMPRFLARLPYGAKTDPVDAFAFEEETNGADSSKYTWANSAYAMAANINRSFKLYGWCSRIRGVESGGEVPNLPTHTFP
TDDGGVDMKCPTEIAIADRREAELAKNGFMPLLHKKNTDLAAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATCRFA
HYLKCIVRDKIGSFKEKDDMQRWLQNWILNYVDGDPAHSTETTKAQHPLAAAEVVVEEIEGNPGYYSSKFYLRPHYQLEG
LTVSLRLVSKLPSAKAV*

  Nucleotide sequence: 1494 bp    

>T6CP015779 NZ_CM001559:4047108-4048601 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssC]
ATGGCCGAATTGATGAAAGACCCGCAGGCCCAGGCAGACGCCGCGACCGCACCGAGCGACTTCGCCGCCTTGCTCCTGCA
AGAGTTCAAACCCAAGACCGAGCACGCCCGCGAGGCCGTGGAAAGCGCCGTGCGCACCCTGGCCGAACAGGCCCTGAGCA
AGACCGAGCTGATCTCCAACGACGCGATCAAATCCATCGAATCGATCATCGCCGCGATCGATGCCAAGCTCACCGCGCAG
GTCAACCTGATCATGCATCACCCCGACTTCCAGCAACTGGAAAGCGCCTGGCGCGGCTTGAGCTACCTGGTCAACAACAC
GGAAACCGACGAGCAGCTGAAGATCCGCGTGATGAGCATCGCCAAGGGCGACCTGCACAAGACCCTGAAGAAGTTCAAGG
GCACCGCCTGGGACCAGAGCCCGATCTTCAAGAAAATGTACGAAGAGGAATACGGCCAGTTCGGCGGCGAGCCGTTCGGC
TGCCTGGTGGGCGATTACTACTTCGACCAGTCGTCGCCGGACGTCGAGCTGCTCGGCGAGCTGGCCAAGGTCTGCGCGGC
GATGCATGCGCCCTTCATTAGCGCGGCCTCGCCGACGGTGATGGGCATGGGCTCCTGGCAGGAGCTGTCCAACCCGCGCG
ACCTGACCAAGATCTTCACCACGCCGGAATACGCTGCCTGGCGTTCGCTGCGCGACTCCGAGGACTCGCGCTACATCGGC
CTGACCATGCCGCGTTTTCTCGCCCGCCTGCCCTACGGTGCCAAGACCGACCCGGTGGACGCCTTCGCCTTCGAAGAGGA
AACCAACGGCGCCGACAGTTCCAAGTACACCTGGGCCAACTCGGCCTATGCCATGGCGGCGAACATCAACCGCTCGTTCA
AGCTCTATGGCTGGTGCTCGCGGATTCGCGGCGTGGAGTCCGGCGGCGAGGTGCCGAACCTGCCGACGCATACCTTCCCG
ACCGACGACGGTGGGGTGGACATGAAGTGCCCGACCGAAATCGCCATCGCCGATCGGCGCGAGGCGGAGCTGGCGAAGAA
CGGTTTCATGCCGCTGCTGCACAAGAAGAACACCGACCTCGCCGCCTTCATCGGCGCCCAGTCGCTGCAGAAGCCGGCCG
AGTATGACGACCCCGACGCCACCGCCAACGCCAACCTGGCGGCGCGCCTGCCCTACCTGTTCGCCACCTGCCGCTTCGCC
CATTACCTGAAGTGCATCGTTCGCGACAAGATCGGCTCGTTCAAGGAAAAGGACGACATGCAGCGCTGGCTGCAGAACTG
GATTCTCAATTACGTGGACGGCGACCCGGCCCACTCCACCGAAACCACCAAGGCGCAGCACCCCTTGGCCGCGGCGGAGG
TGGTGGTCGAGGAGATCGAGGGCAACCCCGGTTACTACAGCTCCAAGTTCTACCTGCGCCCGCACTACCAGCTCGAAGGG
CTCACGGTATCGCTGCGGCTGGTATCCAAACTTCCATCCGCCAAGGCGGTTTGA