Detailed information of component protein


Summary

Component ID T6CP015774
Component protein type TssL
T6SS ID (Type) T6SS01267 insolico (Type i3)
Strain Pseudomonas chlororaphis subsp. aureofaciens 30-84
Replicon chromosome
Sequence Protein sequence (456 a.a.); Nucleotide sequence (1368 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PCHL3084_RS17685
Coordinate (Strand) 4040398..4041765 (-)
NCBI ID WP_009044333.1
RefSeq NZ_CM001559
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 5.6e-68 73..275
OmpA PF00691.22 4.6e-16 345..443
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 456 a.a.    

>T6CP015774 NZ_CM001559:c4041765-4040398 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssL]
MHPIDDPFGNSGAGGTSGGVSTGGNDRTLIMPRPGGRSVDASALRTDAASAADPHIAMPGAPVASSLAQGLNPLERAAGP
ILALLTRLRSTLAHPQPASLRAQLLAYLRQFEEQARAAGVAQDEVMLSRYVLCTALDEAVLSTPWGSTSDWGKQSLLITL
HNEAWGGEKVFQLLEHCLQNPQQRLHILELLYLCICLGFEGRYRVMNDGRSQLEALRERTSATIRSVRGEFERELSPHWR
GLSVVRDRLSQFLPPWVGVAICLAVLLLLLFGLRLKLAADAEPVFRNIHALGEIPVQAIDRPPQQPRLIERPRLARFLAE
DIKAQRVAVEDALDRSVVTIRGDELFASGSASISEQLQPLLLRVADALRQIKGTVQVTGHSDNRPIATLRYPSNWKLSQD
RAQQVMEILAARSGQPERFTAEGRSDAEPVASNDSAAGRARNRRVEITVLAEGNQ*

  Nucleotide sequence: 1368 bp    

>T6CP015774 NZ_CM001559:c4041765-4040398 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssL]
ATGCACCCGATCGATGATCCCTTCGGCAACTCTGGCGCAGGTGGCACTTCAGGCGGCGTCTCGACGGGCGGCAACGACCG
TACCCTGATCATGCCGCGGCCCGGCGGGCGCTCCGTCGATGCCTCTGCCCTCAGGACGGACGCGGCCAGCGCCGCCGATC
CGCACATTGCGATGCCGGGCGCGCCGGTGGCGAGCAGCCTGGCCCAGGGCCTCAACCCGCTGGAGCGGGCGGCCGGCCCG
ATACTGGCGTTGCTGACCCGCTTGCGCAGCACCCTCGCTCACCCGCAACCGGCCAGCCTGCGCGCCCAGTTGCTGGCTTA
CCTGCGCCAGTTCGAGGAGCAGGCGCGCGCCGCCGGCGTCGCCCAGGATGAGGTGATGCTCAGCCGTTATGTACTCTGTA
CCGCGCTGGACGAAGCGGTACTCAGCACCCCCTGGGGCAGTACCAGCGACTGGGGCAAGCAGAGCCTGCTGATCACCCTG
CACAACGAAGCCTGGGGCGGCGAAAAAGTCTTCCAGCTGCTCGAACACTGTCTGCAGAACCCGCAGCAGCGCCTGCACAT
TCTGGAGCTGCTGTACCTCTGTATCTGCCTGGGCTTCGAGGGCCGTTACCGGGTCATGAATGACGGCCGCAGCCAGCTGG
AGGCCTTGCGCGAACGCACCAGCGCGACCATTCGCAGCGTGCGCGGCGAATTCGAGCGCGAGCTGTCGCCGCATTGGCGG
GGGCTCAGCGTGGTGCGCGATCGCTTGTCGCAGTTCCTGCCGCCCTGGGTTGGCGTAGCCATTTGCCTGGCCGTGCTGTT
GCTGCTGCTGTTCGGCTTGCGCCTGAAGCTGGCGGCCGATGCCGAGCCGGTGTTTCGCAATATCCACGCCCTGGGCGAGA
TCCCGGTGCAAGCCATCGACCGTCCACCGCAGCAGCCCAGGTTGATCGAACGCCCGCGCCTGGCGCGCTTCCTCGCCGAG
GACATCAAGGCCCAGCGCGTTGCCGTGGAGGATGCGCTGGATCGCTCGGTGGTGACCATCCGTGGCGACGAGTTGTTCGC
CTCGGGCAGCGCGAGCATTTCCGAACAGTTGCAGCCCTTGCTGCTGCGGGTCGCCGATGCCCTGCGCCAGATCAAGGGCA
CGGTGCAGGTCACCGGGCACAGCGATAACCGACCGATCGCCACCTTGCGCTACCCCTCGAACTGGAAGCTGTCGCAGGAT
CGGGCGCAGCAAGTGATGGAGATCCTGGCTGCCCGCAGCGGGCAACCCGAGCGCTTCACCGCCGAAGGGCGCAGCGACGC
CGAACCGGTCGCCTCCAATGACAGCGCCGCCGGACGCGCCAGGAACAGGCGCGTGGAGATCACCGTGCTAGCGGAGGGCA
ACCAGTGA