Detailed information of component protein


Summary

Component ID T6CP015782
Component protein type TssF
T6SS ID (Type) T6SS01267 insolico (Type i3)
Strain Pseudomonas chlororaphis subsp. aureofaciens 30-84
Replicon chromosome
Sequence Protein sequence (620 a.a.); Nucleotide sequence (1860 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PCHL3084_RS17740
Coordinate (Strand) 4050810..4052669 (+)
NCBI ID WP_009044343.1
RefSeq NZ_CM001559
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 2.4e-234 1..615
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 620 a.a.    

>T6CP015782 NZ_CM001559:4050810-4052669 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssF]
MNPRMLEYYNQELQHIRESAAEFAQEFPKIASRLTLSGIECADPYVERLLEGFAYLSARVHLKLDAEYPTFTHNLLEIAY
PHYLAPTPSVVVVQLVADPNEGSLTSGFTVERHAALRGQLGHGEQTACEYRSAHAVTLWPLQVSHAEYFGNPAATLGRLA
ASEPKAKAGLRLRLRCGAGLPFNALALDSLPLYLNGADEQPFRLYEQLLGNACAVFIKSVDGDWAERLPLQSLKARGFDD
QDAVLPVVPRAFQGYRLLQEYFALPNRFLFVDFTGLSAGVQRCASQELEVVVLFDRLDSTLEGTVSAAQFVPFCTPAVNL
FARRTDRIHLNERVHEHQVIADRTRPLDFEIHSLTQVTGHGSGPEQPFQPFYAIRDPLRYGREQAYYIVRREPRRLSSQQ
RRRGPRSTYIGSETFVSLVDVNQAPYRHDLRQLGLSALCTNRDLPLLMPVGTGKSDFTLEDSAPVLAVRCLAGPSRPRPS
RAHDASAWRLISQLSLNYLSLSEQGQGAAALRELLRLYGDPGDAALQLQIEGLRQVRSTPCTRRLPMPGPIVFGRGLEIS
LEFDENAFRGTGVYLLGAVFERFLARYVSINSFTETVLRTTERGEIMRWQAHPGCRPNL*

  Nucleotide sequence: 1860 bp    

>T6CP015782 NZ_CM001559:4050810-4052669 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssF]
ATGAACCCGCGCATGCTCGAGTATTACAACCAGGAGCTGCAGCATATCCGCGAGAGCGCCGCCGAGTTCGCCCAGGAGTT
CCCCAAGATTGCCAGCCGCCTGACCCTGTCCGGCATCGAATGCGCCGACCCCTATGTCGAGCGCCTGCTGGAGGGCTTCG
CCTACCTGAGCGCGCGGGTCCACCTGAAGCTGGACGCCGAATACCCGACCTTCACCCACAATCTGCTGGAAATCGCCTAC
CCCCATTACCTGGCACCAACGCCTTCGGTGGTGGTGGTCCAGCTGGTCGCCGACCCCAACGAGGGTTCGCTGACCAGCGG
CTTCACGGTCGAACGCCACGCCGCCCTGCGCGGCCAGCTGGGCCATGGCGAGCAGACCGCCTGCGAATACCGTAGCGCCC
ATGCCGTGACGCTGTGGCCGTTGCAGGTCAGCCATGCCGAATACTTCGGCAACCCGGCCGCGACCCTCGGCCGACTGGCC
GCCAGCGAACCCAAGGCCAAGGCCGGGTTGCGCCTGCGCCTGCGCTGCGGCGCCGGGTTGCCGTTCAACGCCCTGGCGCT
GGACAGCCTGCCGCTCTACCTCAACGGCGCCGACGAGCAACCTTTCCGTCTGTACGAGCAGCTGCTCGGCAACGCCTGCG
CGGTGTTTATCAAGAGCGTCGACGGCGACTGGGCCGAGCGCTTGCCTCTGCAGAGCCTCAAGGCGCGCGGCTTCGACGAT
CAGGACGCGGTGCTGCCGGTGGTGCCCCGGGCCTTCCAGGGGTATCGCCTGCTGCAGGAATATTTCGCCCTGCCCAATCG
TTTTTTGTTCGTCGACTTCACCGGGCTGAGCGCCGGTGTGCAGCGCTGCGCCAGCCAGGAACTGGAGGTGGTGGTGCTGT
TCGATCGCCTCGACAGTACCCTGGAAGGCACGGTATCCGCAGCCCAATTCGTGCCCTTCTGCACCCCGGCGGTGAACCTG
TTTGCACGCCGCACCGATCGCATTCACCTGAACGAGCGGGTGCATGAGCACCAGGTGATCGCCGACCGCACCCGGCCGCT
GGATTTCGAGATCCATTCCCTGACCCAGGTCACCGGCCATGGCAGCGGCCCCGAGCAGCCGTTCCAGCCGTTCTATGCGA
TCCGCGACCCGCTGCGTTATGGCCGCGAGCAGGCCTACTACATCGTCCGCCGCGAGCCGCGTCGCCTGTCCAGCCAGCAA
CGGCGACGCGGGCCACGCTCGACCTATATCGGCAGCGAAACCTTCGTCTCGCTGGTGGATGTCAACCAGGCGCCCTATCG
CCACGACTTGCGCCAGCTCGGTCTCAGCGCCCTGTGCACCAACCGCGACCTGCCGCTGCTGATGCCGGTGGGTACCGGCA
AAAGCGATTTCACCCTGGAAGACAGCGCCCCGGTGCTGGCCGTGCGCTGCCTGGCCGGGCCAAGCCGGCCGCGGCCGAGC
CGCGCGCACGATGCCAGCGCCTGGCGGCTGATCAGCCAGCTGTCGCTGAACTACCTGTCCCTGAGCGAACAGGGCCAGGG
GGCCGCGGCGCTGCGCGAATTGCTGCGCCTGTACGGCGACCCCGGCGATGCGGCGCTGCAGTTGCAAATCGAGGGCCTGC
GCCAGGTGCGCAGCACGCCCTGCACCCGCCGCTTGCCGATGCCGGGACCGATCGTTTTTGGCCGTGGCCTGGAGATAAGC
CTGGAGTTCGACGAAAACGCCTTCCGCGGCACCGGCGTGTACCTGCTGGGCGCGGTGTTCGAGCGTTTCCTGGCCCGTTA
CGTGTCGATCAACAGCTTCACCGAAACCGTGCTGCGCACCACCGAGCGCGGCGAAATCATGCGATGGCAGGCGCACCCCG
GATGTCGACCGAACCTCTGA