Detailed information of component protein


Summary

Component ID T6CP015784
Component protein type TssH
T6SS ID (Type) T6SS01267 insolico (Type i3)
Strain Pseudomonas chlororaphis subsp. aureofaciens 30-84
Replicon chromosome
Sequence Protein sequence (908 a.a.); Nucleotide sequence (2724 bp)
Reference
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insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PCHL3084_RS17750
Coordinate (Strand) 4053678..4056401 (+)
NCBI ID WP_009044345.1
RefSeq NZ_CM001559
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.4e-37 631..797
AAA_lid_9 PF17871.3 9.5e-28 373..465
ClpB_D2-small PF10431.11 2.1e-12 804..878
AAA PF00004.31 1.2e-08 234..367
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 908 a.a.    

>T6CP015784 NZ_CM001559:4053678-4056401 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssH]
MSEISRAALFGKLNSPAYKAIEAATVFCKLRGNPYVELVHWLHQFLQLQDSDLHRLVRQFSLDPARLSRDITDALDRLPR
GSTSITDLSLQVEEAAERGWVYGSLLFGESQVRGAYLVVGMLKTPGLRHALSAISREFDKIKVEHLIERFDEYLGDSPEN
GLAASDGFNATAAPGEASGALAPSALGKQEALKRFTVDLTEQARSGKLDPIVGRDEEIRQLVDILMRRRQNNPILTGEAG
VGKTAVVEGFALRIVAGDVPPSLKDVELRTLDVGLLQAGASMKGEFEQRLRQVIEDVQASPRPIILFIDEAHTLVGAGGA
AGTGDAANLLKPALARGTLRTVAATTWAEYKKHIEKDPALTRRFQVVQVDEPSEAKAILMMRGVASTMEQHHKVQILDEA
LEASVKLSHRYIPARQLPDKSVSLLDTACARVAISLHAVPAQVDDSRRRIEALSTEQAIIGREQAIGIAIGTRQQEVEAA
LAEERQRLATLEGRWSEEKALVDELLATRATLRAAAEPLDDTSGEAGAASPRLGEAERTALRDKLGDLQSRLATLQGESP
LILPTVDYQAVAAVVADWTGIPVGRMARNEIDTVLRLDEHMKKRIIGQDHALAMIAKRIQTSRAGLDNPSKPIGVFLLAG
TSGVGKTETALALAEALYGGEQNIITINMSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPD
VHEIFFQVFDKGVMEDGEGRLIDFKNCLILLTTNAGTEMIASLCRDPQRLPDPDAIAKALREPLLQVFPPALLGRLVTVP
YYPLSDEMLKAITRLQLERIKQRVESGHKVPFAYDDSVVDLIVSRCTEIESGGRMIDAILTNTLLPDMSREFLTRMLEGK
PLAGVRISQRDNALHYAFDPHVGETTD*

  Nucleotide sequence: 2724 bp    

>T6CP015784 NZ_CM001559:4053678-4056401 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssH]
ATGAGTGAGATCAGCCGCGCCGCGCTGTTCGGCAAGTTGAACAGCCCGGCCTACAAGGCCATCGAAGCCGCCACCGTGTT
CTGCAAACTGCGCGGCAACCCCTATGTGGAGCTGGTGCATTGGCTGCATCAGTTCCTGCAATTGCAGGACTCTGACCTGC
ACCGTCTGGTCCGCCAGTTCAGCCTCGACCCGGCGCGCCTGTCCAGGGATATCACCGACGCCCTGGACCGCCTGCCGCGC
GGCTCGACCTCGATCACCGACTTGTCCTTGCAGGTCGAGGAAGCCGCGGAGCGCGGCTGGGTCTATGGCAGTTTGCTGTT
CGGCGAAAGCCAGGTGCGCGGCGCCTACCTGGTCGTCGGCATGCTCAAGACACCGGGCCTGCGCCACGCCCTCTCGGCCA
TCTCCCGCGAGTTCGACAAGATCAAGGTGGAGCACCTGATCGAGCGCTTCGACGAATACCTCGGCGACTCGCCGGAAAAC
GGCCTGGCCGCCAGCGACGGTTTCAACGCCACCGCCGCGCCGGGCGAAGCGAGCGGTGCCCTGGCGCCCAGCGCGCTGGG
CAAGCAGGAGGCGCTCAAGCGCTTTACCGTAGACCTCACCGAACAGGCCCGCAGCGGCAAGCTCGACCCCATAGTCGGGC
GCGACGAGGAGATTCGCCAACTGGTCGATATCCTCATGCGCCGCCGGCAGAACAACCCGATTCTCACCGGCGAAGCCGGG
GTCGGCAAGACCGCGGTGGTCGAGGGCTTCGCCCTGCGTATCGTCGCCGGCGACGTGCCGCCGAGCCTCAAGGACGTCGA
ACTGCGCACCCTGGACGTCGGCCTGCTGCAAGCCGGCGCGAGCATGAAGGGCGAGTTCGAACAGCGCCTGCGCCAGGTCA
TCGAGGATGTGCAGGCCTCGCCCAGGCCTATCATCCTGTTTATCGACGAGGCCCATACCCTGGTCGGTGCCGGCGGCGCG
GCCGGTACCGGCGATGCCGCCAACCTGCTCAAGCCGGCCCTGGCCCGTGGCACCCTGCGCACCGTGGCGGCAACCACCTG
GGCCGAATACAAAAAGCACATCGAGAAGGACCCGGCCCTGACCCGGCGCTTCCAGGTGGTGCAGGTCGACGAGCCGTCCG
AGGCCAAGGCGATCCTGATGATGCGCGGCGTCGCCTCGACCATGGAGCAGCACCACAAGGTGCAGATCCTCGACGAGGCG
CTGGAAGCCTCGGTCAAGCTGTCGCACCGTTATATTCCGGCCCGGCAGCTGCCGGACAAATCGGTAAGCCTGCTCGACAC
CGCCTGCGCGCGGGTCGCCATCAGCCTGCATGCGGTACCGGCGCAAGTGGACGACAGCCGCCGACGCATCGAGGCGCTGA
GCACCGAGCAGGCGATCATCGGCCGCGAGCAGGCCATTGGCATTGCCATCGGCACTCGCCAGCAGGAGGTCGAGGCGGCC
CTCGCCGAGGAACGCCAACGCCTGGCGACCCTGGAGGGTCGCTGGAGCGAAGAGAAAGCCCTGGTCGATGAACTGCTGGC
GACCCGCGCCACCCTGCGCGCCGCCGCCGAACCGCTGGACGACACCAGCGGCGAGGCCGGCGCTGCATCGCCGCGCCTGG
GTGAAGCCGAACGCACGGCGTTGCGCGACAAACTCGGCGACCTGCAGAGCCGCCTCGCCACCTTGCAGGGCGAAAGCCCG
TTGATCCTGCCCACCGTGGATTACCAGGCGGTGGCCGCGGTGGTCGCCGACTGGACCGGCATCCCGGTCGGGCGCATGGC
GCGCAACGAAATCGACACCGTGCTCAGGCTCGACGAGCACATGAAAAAACGCATCATCGGCCAGGACCATGCCCTGGCGA
TGATCGCCAAGCGCATCCAGACCTCGCGCGCCGGGCTGGACAACCCCAGCAAACCGATTGGCGTGTTCCTCCTCGCCGGC
ACCTCGGGCGTGGGCAAGACCGAAACCGCCCTGGCCCTGGCCGAGGCCCTGTACGGCGGCGAGCAGAACATCATCACCAT
CAACATGAGCGAGTTCCAGGAGGCGCACACCGTCTCCACCCTCAAGGGCGCCCCGCCCGGCTATGTCGGTTACGGCGAAG
GCGGCGTGCTGACCGAGGCGGTGCGGCGCAAACCCTACAGCGTGGTGTTGCTGGACGAGGTGGAGAAGGCCCACCCGGAC
GTGCACGAAATCTTCTTCCAGGTGTTCGACAAGGGGGTGATGGAGGACGGCGAAGGCCGCCTGATCGATTTCAAGAACTG
CCTGATCCTGCTCACCACCAATGCCGGCACCGAGATGATCGCCAGCCTGTGCCGCGACCCGCAACGGCTGCCCGATCCCG
ATGCCATCGCCAAGGCGCTGCGCGAGCCATTGCTCCAGGTGTTCCCGCCGGCCCTGCTCGGGCGCCTGGTGACCGTCCCC
TACTACCCGCTGAGCGACGAGATGCTCAAGGCCATCACCCGCCTGCAACTGGAACGGATCAAGCAGCGCGTGGAAAGCGG
GCACAAGGTGCCCTTCGCCTACGACGACAGCGTGGTCGACCTGATCGTCTCGCGCTGCACCGAGATCGAGAGCGGCGGAC
GGATGATCGACGCCATCCTGACCAATACCCTGTTGCCGGACATGAGCCGGGAGTTTCTCACCCGCATGCTCGAGGGCAAG
CCGCTGGCGGGCGTGCGCATCAGCCAACGGGACAATGCGCTGCATTACGCATTCGACCCGCATGTTGGCGAGACAACCGA
CTGA