Detailed information of component protein


Summary

Component ID T6CP015775
Component protein type TssK
T6SS ID (Type) T6SS01267 insolico (Type i3)
Strain Pseudomonas chlororaphis subsp. aureofaciens 30-84
Replicon chromosome
Sequence Protein sequence (445 a.a.); Nucleotide sequence (1335 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PCHL3084_RS17690
Coordinate (Strand) 4041772..4043106 (-)
NCBI ID WP_009044334.1
RefSeq NZ_CM001559
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 5e-156 19..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 445 a.a.    

>T6CP015775 NZ_CM001559:c4043106-4041772 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssK]
MSWNNRVVWSEGMFLRPQHLQQHDRYMEALIDGRCRPLSAGGWGFSELRIDESLLGQGKVAIVSARGVLPDGTPFDIPGD
DLPPPPLNVNDNLRDAQVFLGLPLKRAGSRDTVGEGEAPGGARYISQVREVRDDNAAFESRASLAIGGKALRLLTERDGL
GEYACLGLLRVLEKRADNAVQLDDDYIAPLLDVAASSVLAAFRSELQGLLHQRGEALAGRVVASGAGGASEIADFLLLQL
VNRAEPLLSHLARLSPLHPQDFYREAVCLAGEFATFSAAGRRPSDYPAYAHDDLASSFAPVMHDLRQALSMVIDTRATPI
PIIEKSYGVHVAMLADKSLLEMASFVLVVRAEVPAETLRTHFPQQAKIGSVEHIRDLVNLQLPGIALLSMPVAPRQIPYH
AGSSYFELDRGSEHWKQLANSGGFAFHIAGQFPGLNLAFWAIRG*

  Nucleotide sequence: 1335 bp    

>T6CP015775 NZ_CM001559:c4043106-4041772 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssK]
ATGTCCTGGAATAACCGTGTGGTGTGGTCCGAAGGAATGTTTCTGCGGCCGCAGCATCTCCAGCAACATGATCGCTACAT
GGAAGCCCTGATCGATGGCCGTTGCCGCCCGTTGAGCGCCGGGGGCTGGGGATTCTCCGAGCTGCGCATCGACGAGTCCC
TGCTCGGCCAGGGCAAGGTGGCGATTGTCAGCGCGCGCGGGGTGCTACCCGATGGCACGCCTTTCGACATTCCCGGCGAC
GATCTGCCGCCGCCGCCACTGAACGTCAACGACAATTTGCGCGATGCGCAGGTCTTCCTGGGTTTGCCGCTCAAGCGGGC
CGGCAGCCGCGACACCGTGGGGGAGGGCGAAGCTCCGGGCGGTGCGCGCTACATCAGCCAGGTGCGGGAAGTGCGCGATG
ACAACGCCGCCTTCGAGAGCCGGGCGTCGCTGGCGATCGGCGGCAAAGCCCTGCGCCTGCTGACCGAGCGCGACGGCCTC
GGCGAATATGCCTGCCTCGGTTTGCTGCGGGTGCTGGAAAAACGCGCGGACAATGCCGTGCAACTGGACGACGACTATAT
TGCGCCGCTGCTCGATGTGGCCGCCTCCAGCGTGCTGGCGGCCTTTCGCAGCGAGCTGCAGGGGTTGTTGCACCAGCGCG
GCGAGGCCCTGGCAGGAAGAGTGGTGGCCTCGGGGGCCGGCGGCGCCTCGGAGATCGCCGACTTTCTGCTGCTGCAACTG
GTCAATCGCGCCGAGCCCTTGCTCAGCCACCTGGCCCGGTTGAGCCCCTTGCATCCGCAGGACTTCTATCGCGAGGCGGT
CTGCCTGGCGGGGGAATTCGCCACCTTTTCCGCTGCCGGGCGTCGCCCCAGCGACTACCCGGCCTATGCCCACGACGACC
TGGCGAGCAGCTTCGCCCCGGTGATGCATGACCTGCGGCAAGCGTTGTCGATGGTCATCGATACCCGCGCCACGCCGATT
CCGATCATCGAGAAGTCCTATGGCGTGCATGTGGCGATGCTGGCCGACAAGAGCTTGCTGGAGATGGCCAGCTTCGTCCT
GGTGGTGCGGGCCGAGGTGCCGGCCGAAACCCTGCGCACGCATTTCCCCCAGCAGGCCAAGATCGGTTCGGTGGAACACA
TCCGCGACCTGGTCAATCTGCAGTTGCCCGGCATCGCCTTGCTGTCCATGCCCGTGGCGCCGCGGCAAATTCCCTATCAC
GCCGGTTCAAGCTATTTCGAACTGGACCGTGGCAGCGAACACTGGAAACAGCTGGCCAATTCAGGGGGCTTCGCCTTTCA
CATTGCCGGCCAGTTCCCAGGCCTGAACCTGGCCTTCTGGGCCATCCGAGGATAG