Detailed information of component protein
Summary
| Component ID | T6CP015780 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS01267  (Type i3) |
| Strain | Pseudomonas chlororaphis subsp. aureofaciens 30-84 |
| Replicon | chromosome |
| Sequence | Protein sequence (163 a.a.); Nucleotide sequence (489 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PCHL3084_RS17720 |
| Coordinate (Strand) | 4048699..4049187 (+) |
| NCBI ID | WP_009044340.1 |
| RefSeq | NZ_CM001559 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 4.3e-41 | 6..136 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 163 a.a.
>T6CP015780 NZ_CM001559:4048699-4049187 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssD]
MAVDMFIKIGDVKGESQDKNHKEEIDVLSWSWAMAQSGNMHVGGGGGAGKVNIHDLTLTKWVDKSSPNLMMACSSGKHYD
EAKLTVRKAGGDDPVEYLTITLKEVLVSSIGTGGSGGADRLTENIALNFGQVLVDYQPQKQDGSKDGGPVKYGWNIRQNV
KV*
MAVDMFIKIGDVKGESQDKNHKEEIDVLSWSWAMAQSGNMHVGGGGGAGKVNIHDLTLTKWVDKSSPNLMMACSSGKHYD
EAKLTVRKAGGDDPVEYLTITLKEVLVSSIGTGGSGGADRLTENIALNFGQVLVDYQPQKQDGSKDGGPVKYGWNIRQNV
KV*
Nucleotide sequence: 489 bp
>T6CP015780 NZ_CM001559:4048699-4049187 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssD]
ATGGCTGTTGATATGTTTATCAAGATCGGCGACGTCAAGGGCGAGTCCCAGGACAAGAACCACAAGGAGGAGATCGACGT
GCTCTCCTGGAGCTGGGCCATGGCCCAGTCCGGCAACATGCATGTGGGCGGTGGCGGCGGTGCCGGCAAGGTCAATATCC
ACGACCTGACGTTGACCAAGTGGGTGGATAAATCCTCCCCCAACCTGATGATGGCCTGCTCCAGCGGCAAGCATTACGAC
GAGGCCAAGCTGACGGTGCGCAAGGCCGGCGGCGACGATCCGGTCGAGTACCTGACCATCACCCTCAAGGAGGTCCTGGT
GTCCTCGATCGGCACCGGCGGCAGCGGCGGCGCGGATCGCCTGACCGAAAACATCGCGCTGAATTTCGGCCAGGTGCTGG
TCGACTACCAACCGCAGAAGCAGGACGGTTCCAAGGACGGCGGCCCGGTCAAGTACGGCTGGAATATCCGCCAAAACGTC
AAGGTGTGA
ATGGCTGTTGATATGTTTATCAAGATCGGCGACGTCAAGGGCGAGTCCCAGGACAAGAACCACAAGGAGGAGATCGACGT
GCTCTCCTGGAGCTGGGCCATGGCCCAGTCCGGCAACATGCATGTGGGCGGTGGCGGCGGTGCCGGCAAGGTCAATATCC
ACGACCTGACGTTGACCAAGTGGGTGGATAAATCCTCCCCCAACCTGATGATGGCCTGCTCCAGCGGCAAGCATTACGAC
GAGGCCAAGCTGACGGTGCGCAAGGCCGGCGGCGACGATCCGGTCGAGTACCTGACCATCACCCTCAAGGAGGTCCTGGT
GTCCTCGATCGGCACCGGCGGCAGCGGCGGCGCGGATCGCCTGACCGAAAACATCGCGCTGAATTTCGGCCAGGTGCTGG
TCGACTACCAACCGCAGAAGCAGGACGGTTCCAAGGACGGCGGCCCGGTCAAGTACGGCTGGAATATCCGCCAAAACGTC
AAGGTGTGA