Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QMN13_RS10785 Genome accession   NZ_AP027203
Coordinates   2160349..2161398 (-) Length   349 a.a.
NCBI ID   WP_281971775.1    Uniprot ID   -
Organism   Polynucleobacter sp. SHI2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2155349..2166398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMN13_RS10755 (PSHI2_21040) - 2155550..2156257 (-) 708 WP_281970120.1 hypothetical protein -
  QMN13_RS10760 (PSHI2_21050) - 2156277..2156981 (-) 705 WP_281970121.1 TerC family protein -
  QMN13_RS10765 (PSHI2_21060) sucD 2157091..2157984 (-) 894 WP_281970122.1 succinate--CoA ligase subunit alpha -
  QMN13_RS10770 (PSHI2_21070) sucC 2158001..2159161 (-) 1161 WP_281970123.1 ADP-forming succinate--CoA ligase subunit beta -
  QMN13_RS10775 (PSHI2_21080) - 2159236..2159841 (-) 606 WP_281970124.1 DUF2889 domain-containing protein -
  QMN13_RS10780 (PSHI2_21090) recX 2159859..2160377 (-) 519 WP_281970125.1 recombination regulator RecX -
  QMN13_RS10785 (PSHI2_21100) recA 2160349..2161398 (-) 1050 WP_281971775.1 recombinase RecA Machinery gene
  QMN13_RS10790 (PSHI2_21110) - 2161839..2163521 (+) 1683 WP_281970126.1 MFS transporter -
  QMN13_RS10795 (PSHI2_21120) - 2163626..2164516 (+) 891 WP_281970127.1 oxygenase MpaB family protein -
  QMN13_RS10800 (PSHI2_21130) - 2164519..2165136 (-) 618 WP_281970128.1 heme-binding protein -
  QMN13_RS10805 (PSHI2_21140) - 2165220..2166074 (+) 855 WP_281970129.1 sulfurtransferase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37302.86 Da        Isoelectric Point: 5.1871

>NTDB_id=99992 QMN13_RS10785 WP_281971775.1 2160349..2161398(-) (recA) [Polynucleobacter sp. SHI2]
MNGEKQKALTAALAQIEKQFGKGSIMRLGDAEIAQDIQVVSTGSLGLDIALGVGGLARGRVIEIYGPESSGKTTLTLHAV
AEMQKLGGTCAFIDAEHALDVQYAAKLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVIDSVAALVPKAEIEGEMG
DSLPGLQARLMSQALRKLTGTIKRTNSMIIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLDIRRIGSIKKGDDNIGN
ETRVKVVKNKVSPPFREAIFDIMYGSGISREGEIVDMGVEADIVEKSGAWYSYKGEKIGQGKDNARDFLKANPELAKEIE
ALIRAKLGVKGNKAVISGKEDDEVEPPEA

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=99992 QMN13_RS10785 WP_281971775.1 2160349..2161398(-) (recA) [Polynucleobacter sp. SHI2]
ATGAATGGCGAAAAACAAAAGGCCTTGACTGCAGCACTGGCCCAAATTGAAAAACAATTTGGTAAGGGTTCAATCATGCG
TCTTGGCGATGCTGAAATTGCTCAGGATATCCAAGTTGTATCTACCGGGTCGTTGGGACTTGATATAGCACTTGGAGTGG
GTGGACTTGCCAGAGGACGCGTAATCGAGATTTACGGACCAGAATCATCAGGCAAAACTACGTTGACTTTGCATGCTGTA
GCTGAAATGCAAAAACTTGGCGGTACTTGCGCATTTATTGATGCTGAGCATGCCTTAGATGTTCAGTATGCTGCCAAATT
GGGCGTTGATGTTAATAATCTTTTAATCTCCCAACCCGATACCGGTGAACAAGCCCTAGAAATTGCTGATGCGTTAGTGC
GCTCTGGCTCCATTGACTTAATTGTGATTGACTCAGTGGCTGCATTGGTTCCAAAAGCCGAAATAGAGGGTGAAATGGGA
GACTCGCTCCCTGGCTTACAGGCTCGCCTCATGAGTCAAGCATTACGTAAATTAACTGGCACCATTAAACGTACGAATTC
GATGATCATTTTTATTAATCAGATACGTATGAAGATTGGTGTTATGTTTGGTTCTCCTGAGACAACCACAGGGGGTAATG
CTTTAAAGTTCTACGCTTCCATGCGCCTTGATATTCGTCGTATTGGAAGTATCAAAAAAGGTGATGACAATATTGGAAAT
GAGACTAGAGTTAAAGTGGTTAAAAACAAAGTCTCTCCACCCTTTAGAGAAGCTATATTTGACATTATGTACGGCTCAGG
GATTTCTCGAGAAGGAGAGATTGTCGATATGGGTGTAGAAGCAGATATCGTTGAGAAGTCAGGTGCGTGGTATAGCTACA
AAGGTGAAAAAATTGGACAAGGCAAAGACAATGCGCGCGATTTTCTAAAGGCGAATCCTGAATTAGCAAAAGAAATTGAA
GCTCTAATTCGCGCAAAATTAGGTGTTAAAGGAAATAAAGCAGTTATATCTGGTAAGGAAGATGACGAAGTCGAACCTCC
AGAAGCTTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.924

98.281

0.805
  recA Neisseria gonorrhoeae strain FA1090

69.914

100

0.699
  recA Neisseria gonorrhoeae MS11

69.914

100

0.699
  recA Neisseria gonorrhoeae MS11

69.914

100

0.699
  recA Acinetobacter baylyi ADP1

70.52

99.14

0.699
  recA Acinetobacter baumannii D1279779

69.942

99.14

0.693
  recA Pseudomonas stutzeri DSM 10701

71.56

93.696

0.67
  recA Glaesserella parasuis strain SC1401

68.129

97.994

0.668
  recA Vibrio cholerae strain A1552

70.336

93.696

0.659
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.336

93.696

0.659
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.451

99.14

0.639
  recA Helicobacter pylori 26695

66.258

93.41

0.619
  recA Helicobacter pylori strain NCTC11637

65.951

93.41

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

64.759

95.129

0.616
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.072

95.702

0.613
  recA Streptococcus mitis SK321

60.933

98.281

0.599
  recA Latilactobacillus sakei subsp. sakei 23K

64.11

93.41

0.599
  recA Streptococcus mitis NCTC 12261

60.35

98.281

0.593
  recA Streptococcus pneumoniae D39

62.121

94.556

0.587
  recA Streptococcus pneumoniae R6

62.121

94.556

0.587
  recA Streptococcus pneumoniae TIGR4

62.121

94.556

0.587
  recA Streptococcus pneumoniae Rx1

62.121

94.556

0.587
  recA Lactococcus lactis subsp. cremoris KW2

61.515

94.556

0.582
  recA Streptococcus pyogenes NZ131

61.398

94.269

0.579
  recA Streptococcus mutans UA159

60.909

94.556

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.162

93.696

0.573

Multiple sequence alignment