Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AAID08_RS07960 Genome accession   NZ_CP155917
Coordinates   1738609..1739673 (+) Length   354 a.a.
NCBI ID   WP_054417614.1    Uniprot ID   -
Organism   Achromobacter sp. EB05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1733609..1744673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAID08_RS07945 (AAID08_07940) - 1734072..1735733 (-) 1662 WP_054501371.1 MFS transporter -
  AAID08_RS07950 (AAID08_07945) - 1736047..1737423 (-) 1377 WP_116791107.1 sensor histidine kinase -
  AAID08_RS07955 (AAID08_07950) - 1737539..1738228 (-) 690 WP_006393745.1 response regulator transcription factor -
  AAID08_RS07960 (AAID08_07955) recA 1738609..1739673 (+) 1065 WP_054417614.1 recombinase RecA Machinery gene
  AAID08_RS07965 (AAID08_07960) recX 1739775..1740512 (+) 738 WP_395757505.1 recombination regulator RecX -
  AAID08_RS07970 (AAID08_07965) - 1740581..1741498 (-) 918 WP_054501368.1 LysR family transcriptional regulator -
  AAID08_RS07975 (AAID08_07970) metE 1741693..1743990 (+) 2298 WP_395757506.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38016.33 Da        Isoelectric Point: 5.0617

>NTDB_id=999667 AAID08_RS07960 WP_054417614.1 1738609..1739673(+) (recA) [Achromobacter sp. EB05]
MDDKTTKAAASEKAKALAAALSQIEKQFGKGSIMRYGDNEVSHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQVVAEMQKLGGTCAFVDAEHALDVQYASKLGVNLADLLISQPDTGEQALEITDALVRSGSVDLIVVDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEIIDLGVAANVVDKSGAWYSYNGNRIGQGKDNVREYLKEH
KELAIEIENRVRENQGIVSRAAEFVPTAEDDSDE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=999667 AAID08_RS07960 WP_054417614.1 1738609..1739673(+) (recA) [Achromobacter sp. EB05]
ATGGACGACAAAACCACCAAGGCCGCCGCTTCGGAAAAAGCCAAGGCGCTGGCCGCCGCGCTCTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTACGGCGACAACGAGGTCTCGCATGACATCCAGGTGGTGTCGACCGGCTCGCTGG
GCCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGGTGGAAATCTACGGTCCGGAATCCTCGGGCAAG
ACCACCCTGACCCTGCAGGTCGTGGCCGAAATGCAGAAGCTGGGCGGCACGTGCGCCTTCGTCGACGCCGAACACGCGCT
GGACGTGCAGTACGCCTCGAAGCTGGGCGTCAACCTGGCCGACCTGCTGATCTCGCAGCCGGACACGGGCGAGCAGGCGC
TGGAAATCACCGACGCGCTGGTGCGCTCGGGCTCCGTCGACCTGATCGTGGTCGACTCGGTTGCGGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAAATGGGCGATTCGCTGCCCGGCCTGCAGGCTCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
CGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACC
CCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCTCGATCAAG
AAGGGCGACGAGGTCGTCGGCAACGAAACCCGCGTCAAGGTCGTCAAAAACAAGGTTGCGCCTCCGTTCAAGCAGGCCGA
GTTCGACATCATGTACGGCGCCGGCATCTCGCGCGAAGGCGAAATCATTGACCTGGGCGTGGCCGCCAACGTGGTGGACA
AGTCGGGTGCGTGGTACAGCTACAACGGCAACCGCATCGGCCAGGGCAAGGACAATGTCCGTGAATACCTGAAGGAACAC
AAGGAACTGGCCATCGAGATCGAGAACCGGGTCCGTGAGAACCAGGGCATCGTCAGCCGCGCCGCGGAATTCGTGCCCAC
CGCTGAAGACGACAGCGACGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.578

96.328

0.805
  recA Pseudomonas stutzeri DSM 10701

72.434

96.328

0.698
  recA Neisseria gonorrhoeae MS11

72.866

92.655

0.675
  recA Neisseria gonorrhoeae MS11

72.866

92.655

0.675
  recA Neisseria gonorrhoeae strain FA1090

72.866

92.655

0.675
  recA Acinetobacter baylyi ADP1

69.591

96.61

0.672
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.832

90.678

0.669
  recA Vibrio cholerae strain A1552

73.832

90.678

0.669
  recA Glaesserella parasuis strain SC1401

69.096

96.893

0.669
  recA Acinetobacter baumannii D1279779

72.897

90.678

0.661
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.557

96.893

0.616
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.465

94.068

0.616
  recA Latilactobacillus sakei subsp. sakei 23K

63.265

96.893

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

92.373

0.599
  recA Helicobacter pylori 26695

63.939

93.22

0.596
  recA Helicobacter pylori strain NCTC11637

63.636

93.22

0.593
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

91.243

0.576
  recA Streptococcus pneumoniae Rx1

60

96.045

0.576
  recA Streptococcus pneumoniae D39

60

96.045

0.576
  recA Streptococcus pneumoniae R6

60

96.045

0.576
  recA Streptococcus pneumoniae TIGR4

60

96.045

0.576
  recA Streptococcus mutans UA159

56.425

100

0.571
  recA Streptococcus mitis SK321

59.412

96.045

0.571
  recA Streptococcus mitis NCTC 12261

59.412

96.045

0.571
  recA Streptococcus pyogenes NZ131

60

94.633

0.568
  recA Lactococcus lactis subsp. cremoris KW2

58.824

96.045

0.565

Multiple sequence alignment