Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AAH949_RS07785 Genome accession   NZ_CP155620
Coordinates   1548006..1549043 (-) Length   345 a.a.
NCBI ID   WP_134237888.1    Uniprot ID   A0A4Y8BR95
Organism   Campylobacter sp. CCS1377     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1543006..1554043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH949_RS07755 (AAH949_07755) - 1543376..1544176 (+) 801 WP_348518414.1 ABC transporter ATP-binding protein -
  AAH949_RS07760 (AAH949_07760) - 1544169..1544987 (+) 819 WP_134237893.1 metal ABC transporter permease -
  AAH949_RS07765 (AAH949_07765) - 1544970..1545818 (-) 849 WP_348518415.1 DNA ligase -
  AAH949_RS07770 (AAH949_07770) - 1545820..1546503 (-) 684 WP_134237891.1 AMIN domain-containing protein -
  AAH949_RS07775 (AAH949_07775) - 1546487..1546645 (-) 159 WP_243832572.1 hypothetical protein -
  AAH949_RS07780 (AAH949_07780) eno 1546762..1548006 (-) 1245 WP_134237889.1 phosphopyruvate hydratase -
  AAH949_RS07785 (AAH949_07785) recA 1548006..1549043 (-) 1038 WP_134237888.1 recombinase RecA Machinery gene
  AAH949_RS07790 (AAH949_07790) - 1549155..1550018 (+) 864 WP_348518416.1 menaquinone biosynthesis family protein -
  AAH949_RS07795 (AAH949_07795) fliQ 1550028..1550294 (+) 267 WP_134237886.1 flagellar biosynthesis protein FliQ -
  AAH949_RS07800 (AAH949_07800) - 1550291..1551067 (+) 777 WP_134237885.1 UDP-N-acetylmuramate dehydrogenase -
  AAH949_RS07805 (AAH949_07805) - 1551060..1551749 (-) 690 WP_348518417.1 hypothetical protein -
  AAH949_RS07810 (AAH949_07810) - 1551759..1552532 (-) 774 WP_134237883.1 inositol monophosphatase family protein -
  AAH949_RS07815 (AAH949_07815) - 1552658..1553926 (-) 1269 WP_348518418.1 citrate synthase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37259.55 Da        Isoelectric Point: 4.9747

>NTDB_id=998071 AAH949_RS07785 WP_134237888.1 1548006..1549043(-) (recA) [Campylobacter sp. CCS1377]
MDDNKKKSLDAALKSLDKAFGKGTILRLGDKEVEQIDSIATGSVGLDLALGIGGIPKGRIIEIYGPESSGKTTLTLHIIA
ECQKAGGVCAFIDAEHALDVKYAKNLGVDTDNLYISQPDFGEQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGD
QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGN
RVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPQIADEIT
KAIQNSMGIEGMISGGEDDEEGEQD

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=998071 AAH949_RS07785 WP_134237888.1 1548006..1549043(-) (recA) [Campylobacter sp. CCS1377]
ATGGATGATAATAAAAAGAAGTCTTTAGATGCAGCATTAAAGTCGCTCGATAAAGCTTTTGGTAAAGGTACGATTTTAAG
GCTTGGAGATAAGGAAGTAGAGCAGATTGATAGTATAGCCACAGGCTCAGTTGGACTTGATCTCGCACTTGGAATTGGTG
GAATTCCAAAGGGAAGAATTATTGAAATTTATGGTCCTGAAAGTTCAGGTAAAACGACTTTAACCTTGCATATTATCGCA
GAGTGTCAAAAAGCAGGTGGTGTTTGCGCGTTTATTGACGCAGAGCACGCACTAGATGTGAAATATGCTAAAAATTTAGG
GGTGGATACAGATAATCTTTATATCTCTCAACCTGATTTTGGCGAGCAAGCTTTAGAAATTGTCGAAACCATAGCAAGAA
GTGGTGCGATAGATTTGATCGTAGTTGATAGTGTGGCGGCTCTTACCCCAAAAGCTGAAATTGAAGGTGATATGGGTGAT
CAACATGTAGGACTTCAAGCAAGATTAATGTCTCAGGCTTTAAGAAAACTAACAGGAATTGTCCATAAAATGAATACAAC
TGTGATTTTCATCAATCAAATTCGTATGAAAATTGGTGCTATGGGTTATGGCACTCCAGAAACTACTACAGGTGGAAATG
CACTTAAATTCTACGCTTCGGTGCGTTTAGATGTGAGAAAAGTAGCAACTTTAAAGCAAAATGAAGAGCCTATTGGGAAT
CGTGTTAAAGTGAAGGTGGTGAAAAACAAGGTAGCACCTCCATTTAGACAGGCTGAATTTGATGTGATGTTCGGTGAGGG
ACTTAGTCGCGAGGGTGAGCTCATTGATTATGGTGTAAAACTTGATATTGTAGATAAAAGTGGCGCTTGGTTTTCTTATA
AAGACAAAAAATTGGGTCAAGGTAGAGAAAATTCAAAAGCTTTCTTGAAAGAAAATCCGCAAATTGCAGATGAAATTACT
AAGGCCATCCAAAATTCTATGGGTATAGAAGGTATGATTAGCGGTGGCGAAGATGATGAAGAAGGAGAGCAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y8BR95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.059

98.551

0.957
  recA Helicobacter pylori 26695

79.573

95.072

0.757
  recA Helicobacter pylori strain NCTC11637

79.268

95.072

0.754
  recA Neisseria gonorrhoeae MS11

65.396

98.841

0.646
  recA Neisseria gonorrhoeae MS11

65.396

98.841

0.646
  recA Neisseria gonorrhoeae strain FA1090

65.396

98.841

0.646
  recA Acinetobacter baumannii D1279779

63.372

99.71

0.632
  recA Acinetobacter baylyi ADP1

65.749

94.783

0.623
  recA Glaesserella parasuis strain SC1401

64.724

94.493

0.612
  recA Pseudomonas stutzeri DSM 10701

63.609

94.783

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.651

96.232

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

63.303

94.783

0.6
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.272

93.913

0.594
  recA Vibrio cholerae strain A1552

63.272

93.913

0.594
  recA Ralstonia pseudosolanacearum GMI1000

64.353

91.884

0.591
  recA Streptococcus pneumoniae Rx1

57.101

100

0.571
  recA Streptococcus pneumoniae D39

57.101

100

0.571
  recA Streptococcus pneumoniae R6

57.101

100

0.571
  recA Streptococcus pneumoniae TIGR4

57.101

100

0.571
  recA Streptococcus pyogenes NZ131

58.182

95.652

0.557
  recA Streptococcus mitis NCTC 12261

58.055

95.362

0.554
  recA Latilactobacillus sakei subsp. sakei 23K

58.104

94.783

0.551
  recA Streptococcus mutans UA159

57.1

95.942

0.548
  recA Streptococcus mitis SK321

57.447

95.362

0.548
  recA Lactococcus lactis subsp. cremoris KW2

56.839

95.362

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.177

91.594

0.542

Multiple sequence alignment