Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABDK11_RS06465 Genome accession   NZ_CP155567
Coordinates   1527363..1528409 (+) Length   348 a.a.
NCBI ID   WP_346839484.1    Uniprot ID   -
Organism   Microbulbifer sp. SAOS-129_SWC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1522363..1533409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDK11_RS06445 (ABDK11_06445) - 1523694..1524572 (+) 879 WP_346839480.1 AraC family transcriptional regulator -
  ABDK11_RS06450 (ABDK11_06450) ppnN 1524611..1525984 (-) 1374 WP_346839481.1 nucleotide 5'-monophosphate nucleosidase PpnN -
  ABDK11_RS06455 (ABDK11_06455) - 1526214..1526459 (+) 246 WP_346839482.1 DUF6482 family protein -
  ABDK11_RS06460 (ABDK11_06460) - 1526657..1527175 (+) 519 WP_346839483.1 CinA family protein -
  ABDK11_RS06465 (ABDK11_06465) recA 1527363..1528409 (+) 1047 WP_346839484.1 recombinase RecA Machinery gene
  ABDK11_RS06470 (ABDK11_06470) - 1528440..1528916 (+) 477 WP_346839485.1 regulatory protein RecX -
  ABDK11_RS06475 (ABDK11_06475) - 1529130..1529861 (+) 732 WP_346839486.1 DUF969 domain-containing protein -
  ABDK11_RS06480 (ABDK11_06480) - 1529864..1530811 (+) 948 WP_346839487.1 DUF979 domain-containing protein -
  ABDK11_RS06485 (ABDK11_06485) pcp 1530808..1531452 (+) 645 WP_346839488.1 pyroglutamyl-peptidase I -
  ABDK11_RS06490 (ABDK11_06490) glpK 1531579..1533057 (+) 1479 WP_346839489.1 glycerol kinase GlpK -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37411.80 Da        Isoelectric Point: 4.9696

>NTDB_id=997793 ABDK11_RS06465 WP_346839484.1 1527363..1528409(+) (recA) [Microbulbifer sp. SAOS-129_SWC]
MDSNKDKALQAALSQIERQFGKGTVMRMGDKERERIPAISTGSLGLDVALGIGGLPRGRIVEIYGPESSGKTTLTLQVIA
EAQRKGGTCAFVDAEHALDPIYAEKLGVNVDELIVSQPDTGEQALEVADMLVRSGAVDVLVVDSVAALTPRAEIEGEMGD
SHVGLQARLMSQALRKLTGNIKNTNTLCVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVVGNE
TRVKVVKNKVAPPFKQTEFQIMYGQGINLIGEIIDYGVKLGLVDKAGAWYSYKGDKIGQGKANAGKFLKENQDIRDEIEG
ALRAQLLGDLVPAAKPEETVEAVEAPEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=997793 ABDK11_RS06465 WP_346839484.1 1527363..1528409(+) (recA) [Microbulbifer sp. SAOS-129_SWC]
ATGGATTCCAACAAAGACAAGGCACTGCAGGCGGCGCTGTCTCAGATTGAGCGCCAGTTCGGCAAGGGTACGGTAATGCG
CATGGGGGACAAGGAGCGCGAGCGCATCCCCGCCATTTCTACCGGCTCCCTGGGTCTGGACGTGGCCCTGGGTATCGGTG
GTCTGCCGCGTGGCCGCATCGTCGAGATCTACGGCCCGGAATCCTCCGGTAAAACCACGCTGACCCTGCAGGTCATTGCC
GAGGCCCAGCGCAAGGGCGGCACCTGTGCCTTCGTCGATGCCGAGCACGCGCTGGATCCGATCTACGCCGAGAAGCTGGG
CGTGAACGTGGACGAGCTGATCGTGTCCCAGCCGGATACCGGTGAGCAGGCGCTGGAAGTGGCCGATATGCTGGTGCGCT
CCGGCGCGGTGGACGTGCTGGTTGTCGACTCGGTGGCGGCCCTGACCCCGCGCGCCGAGATCGAGGGCGAGATGGGCGAT
TCCCACGTGGGCCTGCAGGCGCGCCTGATGTCCCAGGCGCTGCGCAAACTGACCGGCAACATCAAGAACACCAACACCCT
GTGTGTATTTATTAACCAGATTCGCATGAAGATCGGTGTGATGTTCGGCTCACCGGAAACCACCACCGGCGGTAATGCGC
TCAAGTTCTACTCCTCCGTGCGCCTGGATATCCGCCGCATCGGCGCTGTGAAAGAGGGCGACGAAGTGGTGGGCAACGAG
ACCCGCGTGAAAGTGGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGACCGAATTCCAGATCATGTATGGCCAGGGCAT
CAACCTGATCGGTGAGATCATCGACTACGGCGTGAAGCTGGGCCTGGTAGACAAGGCCGGTGCCTGGTACAGCTACAAGG
GCGACAAGATCGGTCAGGGCAAGGCCAATGCGGGCAAGTTCCTGAAGGAAAACCAGGATATCCGCGACGAGATTGAGGGC
GCTCTGCGCGCGCAGTTGCTCGGCGATCTGGTGCCGGCGGCCAAGCCGGAAGAGACCGTAGAAGCCGTAGAGGCCCCCGA
AGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

80.734

93.966

0.759
  recA Vibrio cholerae strain A1552

74.618

93.966

0.701
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.618

93.966

0.701
  recA Acinetobacter baylyi ADP1

74.006

93.966

0.695
  recA Acinetobacter baumannii D1279779

74.006

93.966

0.695
  recA Neisseria gonorrhoeae MS11

72.615

93.391

0.678
  recA Neisseria gonorrhoeae MS11

72.615

93.391

0.678
  recA Neisseria gonorrhoeae strain FA1090

72.615

93.391

0.678
  recA Glaesserella parasuis strain SC1401

68.732

97.414

0.67
  recA Ralstonia pseudosolanacearum GMI1000

72.99

89.368

0.652
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

93.966

0.626
  recA Helicobacter pylori strain NCTC11637

62.029

99.138

0.615
  recA Helicobacter pylori 26695

61.449

99.138

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

65.421

92.241

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.236

95.115

0.592
  recA Streptococcus mitis NCTC 12261

56.941

100

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

62.813

91.954

0.578
  recA Streptococcus mutans UA159

60.615

93.391

0.566
  recA Streptococcus pneumoniae D39

59.756

94.253

0.563
  recA Streptococcus pneumoniae Rx1

59.756

94.253

0.563
  recA Streptococcus pneumoniae R6

59.756

94.253

0.563
  recA Streptococcus pneumoniae TIGR4

59.756

94.253

0.563
  recA Streptococcus mitis SK321

59.146

94.253

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.385

93.391

0.555
  recA Streptococcus pyogenes NZ131

58.951

93.103

0.549
  recA Lactococcus lactis subsp. cremoris KW2

57.975

93.678

0.543

Multiple sequence alignment