Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QMG15_RS12730 Genome accession   NZ_AP027055
Coordinates   2545306..2546436 (-) Length   376 a.a.
NCBI ID   WP_281788881.1    Uniprot ID   -
Organism   Limnohabitans sp. INBF002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2540306..2551436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG15_RS12705 (LINBF2_25070) - 2540972..2541484 (-) 513 WP_281788878.1 pilin -
  QMG15_RS12710 (LINBF2_25080) sucD 2541615..2542511 (-) 897 WP_108359436.1 succinate--CoA ligase subunit alpha -
  QMG15_RS12715 (LINBF2_25090) sucC 2542522..2543682 (-) 1161 WP_108359437.1 ADP-forming succinate--CoA ligase subunit beta -
  QMG15_RS12720 (LINBF2_25100) argC 2543855..2544772 (+) 918 WP_281788879.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  QMG15_RS12725 (LINBF2_25110) recX 2544769..2545257 (-) 489 WP_281788880.1 recombination regulator RecX -
  QMG15_RS12730 (LINBF2_25120) recA 2545306..2546436 (-) 1131 WP_281788881.1 recombinase RecA Machinery gene
  QMG15_RS12735 (LINBF2_25130) - 2546577..2547086 (+) 510 WP_281788882.1 MarR family transcriptional regulator -
  QMG15_RS12740 (LINBF2_25140) - 2547124..2547798 (+) 675 WP_104801907.1 response regulator transcription factor -
  QMG15_RS12745 (LINBF2_25150) - 2547814..2549256 (+) 1443 WP_281788883.1 sensor histidine kinase -
  QMG15_RS12750 (LINBF2_25160) - 2549290..2550480 (-) 1191 WP_281788884.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 39824.55 Da        Isoelectric Point: 5.0918

>NTDB_id=99419 QMG15_RS12730 WP_281788881.1 2545306..2546436(-) (recA) [Limnohabitans sp. INBF002]
MNNKPIVADSEKAKALQAALAQIEKQFGKGTIMRLGEGEVIDDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT
TLTLQVIAEMQKQGGTCAFVDAEHALDSQYAQKLGVNLQDLLISQPDTGEQALEVVDSLVRSGAVDLVVVDSVAALTPKA
ELEGDMGDSLPGLQARLMSQALRKLTASIKKTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKR
GDEAVGNETKVKVVKNKVAPPFKTAEFDILFGEGISRQGEIIDMGVNAKVIEKSGAWYAYQGEKIGQGRDNAREFLRENE
ALAFEIENKVRESLGIPLLAGGVDAPAAKEEKAPKASKAAKEAKGAADADADGVVA

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=99419 QMG15_RS12730 WP_281788881.1 2545306..2546436(-) (recA) [Limnohabitans sp. INBF002]
ATGAACAACAAACCCATCGTCGCTGACAGCGAAAAAGCCAAAGCCCTCCAAGCCGCCTTGGCACAAATCGAAAAACAATT
CGGCAAGGGCACCATCATGCGCTTGGGCGAAGGCGAAGTGATTGACGACATCCAAGTCGTCTCCACCGGCTCGTTGGGTT
TGGACATCGCCTTGGGCGTGGGTGGTTTGCCCCGTGGTCGCGTGATTGAAATCTACGGCCCAGAGTCATCCGGCAAAACC
ACCCTCACCTTGCAAGTCATTGCCGAGATGCAAAAGCAAGGCGGCACTTGCGCCTTTGTGGATGCTGAGCACGCTTTGGA
TTCGCAATACGCCCAAAAACTCGGCGTGAACTTGCAAGACCTGCTCATCAGCCAGCCCGACACCGGCGAACAAGCCCTCG
AAGTGGTGGACAGCTTGGTGCGTTCCGGCGCGGTGGATTTGGTGGTGGTGGACTCTGTGGCAGCCCTCACACCCAAGGCC
GAACTCGAAGGCGACATGGGCGATTCATTGCCAGGCTTGCAAGCCCGTTTGATGAGCCAAGCGCTGCGTAAATTGACGGC
TTCCATCAAGAAGACCAATTGCACCGTTATCTTCATCAACCAGATCCGTATGAAGATTGGCGTGATGTTTGGTTCACCCG
AAACCACCACCGGCGGTAACGCGCTCAAGTTCTACGCCTCGGTGCGCTTGGACATTCGCCGCACCGGCACCATCAAGCGT
GGTGACGAGGCCGTGGGTAACGAGACCAAAGTCAAAGTGGTGAAAAACAAAGTGGCGCCTCCGTTCAAGACAGCCGAGTT
CGACATCTTGTTTGGCGAAGGCATCAGCCGCCAAGGTGAAATCATTGACATGGGTGTGAACGCCAAAGTCATTGAAAAGT
CTGGCGCTTGGTATGCGTACCAAGGCGAAAAGATCGGCCAAGGCCGCGACAACGCCCGTGAGTTCTTGCGTGAAAACGAA
GCCTTGGCTTTCGAAATCGAAAACAAGGTGCGCGAATCTTTGGGTATTCCTTTGTTGGCTGGCGGTGTAGATGCACCTGC
GGCCAAAGAAGAAAAAGCGCCCAAGGCCTCTAAGGCTGCCAAAGAAGCCAAAGGCGCTGCGGACGCAGATGCCGACGGCG
TGGTGGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.847

83.511

0.684
  recA Acinetobacter baumannii D1279779

68.497

92.021

0.63
  recA Pseudomonas stutzeri DSM 10701

72.086

86.702

0.625
  recA Acinetobacter baylyi ADP1

68.222

91.223

0.622
  recA Neisseria gonorrhoeae MS11

70.427

87.234

0.614
  recA Neisseria gonorrhoeae strain FA1090

70.427

87.234

0.614
  recA Neisseria gonorrhoeae MS11

70.427

87.234

0.614
  recA Glaesserella parasuis strain SC1401

70.122

87.234

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.693

87.5

0.601
  recA Vibrio cholerae strain A1552

68.693

87.5

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.674

88.032

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.97

89.096

0.588
  recA Helicobacter pylori strain NCTC11637

65.854

87.234

0.574
  recA Helicobacter pylori 26695

65.854

87.234

0.574
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

86.968

0.566
  recA Streptococcus mitis NCTC 12261

60.057

92.553

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

62.424

87.766

0.548
  recA Streptococcus pyogenes NZ131

62.006

87.5

0.543
  recA Streptococcus pneumoniae D39

61.631

88.032

0.543
  recA Streptococcus pneumoniae TIGR4

61.631

88.032

0.543
  recA Streptococcus pneumoniae Rx1

61.631

88.032

0.543
  recA Streptococcus pneumoniae R6

61.631

88.032

0.543
  recA Streptococcus mitis SK321

61.329

88.032

0.54
  recA Streptococcus mutans UA159

60.909

87.766

0.535
  recA Lactococcus lactis subsp. cremoris KW2

60.423

88.032

0.532
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

85.372

0.524

Multiple sequence alignment