Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QMF30_RS08435 Genome accession   NZ_AP026974
Coordinates   1695900..1696991 (-) Length   363 a.a.
NCBI ID   WP_068319467.1    Uniprot ID   A0A9C7CND8
Organism   Polynucleobacter yangtzensis strain KF032     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1690900..1701991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMF30_RS08410 (PKF032_16350) - 1691640..1692224 (-) 585 WP_281745067.1 pilin -
  QMF30_RS08415 (PKF032_16360) - 1692289..1692993 (-) 705 WP_068319457.1 TerC family protein -
  QMF30_RS08420 (PKF032_16370) sucD 1693093..1693986 (-) 894 WP_281745069.1 succinate--CoA ligase subunit alpha -
  QMF30_RS08425 (PKF032_16380) sucC 1694002..1695171 (-) 1170 WP_011903667.1 ADP-forming succinate--CoA ligase subunit beta -
  QMF30_RS08430 (PKF032_16390) recX 1695361..1695882 (-) 522 WP_281745070.1 recombination regulator RecX -
  QMF30_RS08435 (PKF032_16400) recA 1695900..1696991 (-) 1092 WP_068319467.1 recombinase RecA Machinery gene
  QMF30_RS08440 (PKF032_16410) - 1697100..1697642 (-) 543 WP_281745072.1 DUF2878 domain-containing protein -
  QMF30_RS08450 (PKF032_16420) - 1698016..1698570 (-) 555 WP_281745073.1 class I SAM-dependent methyltransferase -
  QMF30_RS08455 (PKF032_16440) - 1699021..1699542 (-) 522 WP_281745075.1 hypothetical protein -
  QMF30_RS08460 (PKF032_16450) pal 1699558..1700049 (-) 492 WP_281745077.1 peptidoglycan-associated lipoprotein Pal -
  QMF30_RS08465 - 1700132..1700485 (-) 354 WP_281745078.1 hypothetical protein -
  QMF30_RS08470 (PKF032_16470) - 1700883..1701311 (-) 429 WP_281745079.1 hypothetical protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38947.49 Da        Isoelectric Point: 4.8286

>NTDB_id=99181 QMF30_RS08435 WP_068319467.1 1695900..1696991(-) (recA) [Polynucleobacter yangtzensis strain KF032]
MALDNKKQSASSEFEGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEISQDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVID
SVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADLVEKSGSWYSYNGDRIGQGKDN
VREFLKENPAIAQDIEKKIREKLGVKVGSAVVTDVLAEEEEVE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=99181 QMF30_RS08435 WP_068319467.1 1695900..1696991(-) (recA) [Polynucleobacter yangtzensis strain KF032]
ATGGCCTTGGATAACAAAAAGCAATCAGCCTCTTCAGAATTTGAAGGAATGAGCGGGGACAAACAAAAAGCATTAACTGC
AGCACTGGCACAAATTGAGAAACAATTTGGCAAAGGTTCAATCATGAGATTGGGCGATGCCGAAATTAGTCAAGATATTC
AGGTAGTTTCTAGCGGTTCACTCGGATTAGATATCGCTCTTGGAGTTGGTGGTCTTGCGCGTGGGCGCGTAATTGAAATT
TACGGTCCAGAATCTTCAGGTAAAACAACACTTACATTGCATGCAATTGCAGAAATGCAAAAGCTTGGTGGCACTTGCGC
ATTTATTGATGCGGAACATGCTCTTGATGTGCAGTACGCATCACGCCTCGGTGTTGATGTAAATAATTTATTGATCTCTC
AACCAGACACTGGCGAGCAAGCTTTAGAAATCGCGGATGCTTTGGTGCGTTCAGGCTCGATTGATCTAATCGTGATCGAC
TCAGTTGCTGCCTTAGTTCCAAGGGCTGAGATCGAAGGCGACATGGGCGATTCCTTGCCAGGTTTGCAAGCACGCTTGAT
GAGCCAAGCTTTACGTAAGTTGACTGGTGCCATCAAGCGTACCAATACCACTGTGATCTTTATTAACCAGATTCGTATGA
AGATTGGCGTGATGTTTGGTTCACCAGAAACAACTACTGGCGGTAACGCTTTGAAGTTCTATGCCTCTATGCGTTTGGAT
ATTCGCCGTATCGGCAGTATCAAAAAAGGTGATGAGGTTGTTGGTAACGAAACTCGCGTTAAAGTTGTGAAGAACAAAGT
TTCTCCTCCATTCCGTGAAGCTATTTTTGACATCATGTACGGCGCTGGGATTTCTAGAGAAGGCGAAATCATTGATATGG
GTGTTGAGGCTGACCTCGTAGAAAAGTCAGGCTCTTGGTATAGCTACAACGGTGATCGCATTGGTCAAGGCAAAGACAAT
GTGCGCGAGTTCTTAAAAGAGAATCCAGCCATCGCCCAAGATATCGAGAAAAAGATTCGTGAGAAGCTTGGTGTGAAAGT
CGGCTCAGCTGTAGTGACTGATGTATTGGCCGAGGAAGAAGAAGTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.223

98.898

0.793
  recA Neisseria gonorrhoeae MS11

72.81

91.185

0.664
  recA Neisseria gonorrhoeae MS11

72.81

91.185

0.664
  recA Neisseria gonorrhoeae strain FA1090

72.81

91.185

0.664
  recA Acinetobacter baumannii D1279779

69.477

94.766

0.658
  recA Acinetobacter baylyi ADP1

69.186

94.766

0.656
  recA Pseudomonas stutzeri DSM 10701

69.617

93.388

0.65
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.642

90.083

0.636
  recA Vibrio cholerae strain A1552

70.642

90.083

0.636
  recA Glaesserella parasuis strain SC1401

68.882

91.185

0.628
  recA Bacillus subtilis subsp. subtilis str. 168

67.485

89.807

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.035

94.215

0.603
  recA Helicobacter pylori 26695

66.871

89.807

0.601
  recA Helicobacter pylori strain NCTC11637

66.564

89.807

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.955

91.185

0.592
  recA Streptococcus pneumoniae R6

60.714

92.562

0.562
  recA Streptococcus pneumoniae TIGR4

60.714

92.562

0.562
  recA Streptococcus pneumoniae Rx1

60.714

92.562

0.562
  recA Streptococcus pneumoniae D39

60.714

92.562

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

62.27

89.807

0.559
  recA Streptococcus pyogenes NZ131

58.43

94.766

0.554
  recA Streptococcus mitis NCTC 12261

60.303

90.909

0.548
  recA Streptococcus mitis SK321

60

90.909

0.545
  recA Streptococcus mutans UA159

59.697

90.909

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

88.43

0.537
  recA Lactococcus lactis subsp. cremoris KW2

59.091

90.909

0.537

Multiple sequence alignment