Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PKF022_RS08495 Genome accession   NZ_AP026972
Coordinates   1651528..1652619 (-) Length   363 a.a.
NCBI ID   WP_281776593.1    Uniprot ID   -
Organism   Polynucleobacter sp. KF022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1646528..1657619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PKF022_RS08470 (PKF022_16390) - 1647267..1647797 (-) 531 WP_281776589.1 pilin -
  PKF022_RS08475 (PKF022_16400) - 1647918..1648622 (-) 705 WP_281776590.1 TerC family protein -
  PKF022_RS08480 (PKF022_16410) sucD 1648722..1649615 (-) 894 WP_072582760.1 succinate--CoA ligase subunit alpha -
  PKF022_RS08485 (PKF022_16420) sucC 1649631..1650800 (-) 1170 WP_281776591.1 ADP-forming succinate--CoA ligase subunit beta -
  PKF022_RS08490 (PKF022_16430) recX 1650989..1651510 (-) 522 WP_281776592.1 recombination regulator RecX -
  PKF022_RS08495 (PKF022_16440) recA 1651528..1652619 (-) 1092 WP_281776593.1 recombinase RecA Machinery gene
  PKF022_RS08500 (PKF022_16450) - 1652728..1653270 (-) 543 WP_281776594.1 DUF2878 domain-containing protein -
  PKF022_RS08510 (PKF022_16460) - 1653477..1653887 (-) 411 WP_216230866.1 hypothetical protein -
  PKF022_RS08515 (PKF022_16470) - 1653934..1654545 (+) 612 WP_281776595.1 MOSC domain-containing protein -
  PKF022_RS08520 (PKF022_16480) - 1654599..1656269 (-) 1671 WP_281776596.1 MFS transporter -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38921.44 Da        Isoelectric Point: 4.7801

>NTDB_id=99161 PKF022_RS08495 WP_281776593.1 1651528..1652619(-) (recA) [Polynucleobacter sp. KF022]
MALDDKRKSASSEFEGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEISEDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVID
SVAALVPKAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADLVEKSGSWYSYNGDRIGQGKDN
VREFLKENPAIAQDIEKKIREKLGVKAGSAVVTDVLAEEEEVE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=99161 PKF022_RS08495 WP_281776593.1 1651528..1652619(-) (recA) [Polynucleobacter sp. KF022]
ATGGCCTTGGATGACAAAAGAAAATCAGCCTCTTCAGAATTTGAAGGAATGAGCGGAGACAAGCAAAAAGCACTAACAGC
AGCACTGGCGCAAATTGAAAAACAATTTGGTAAAGGCTCAATCATGCGATTGGGCGATGCTGAAATTAGCGAAGATATTC
AGGTAGTTTCTAGCGGCTCACTCGGATTGGATATCGCTCTTGGAGTTGGCGGCCTCGCACGTGGTCGCGTGATTGAAATC
TACGGCCCAGAATCTTCTGGCAAAACAACGCTCACGTTGCACGCGATTGCAGAAATGCAAAAACTCGGCGGTACTTGCGC
ATTTATCGACGCTGAACATGCGTTGGATGTGCAGTACGCATCTCGTCTCGGTGTTGACGTAAACAATCTTTTAATCTCTC
AACCAGATACAGGTGAACAAGCTTTAGAAATCGCCGATGCTTTAGTGCGTTCAGGCTCTATTGACTTGATCGTGATCGAT
TCTGTTGCCGCCTTGGTTCCTAAGGCTGAGATTGAGGGCGATATGGGAGACTCTTTGCCTGGCTTACAAGCCCGCTTAAT
GAGTCAGGCATTGCGTAAGTTGACGGGTGCGATCAAGCGCACCAATACTACGGTGATCTTTATTAACCAGATTCGCATGA
AGATTGGTGTGATGTTCGGTTCACCAGAAACAACGACTGGCGGTAACGCTCTGAAGTTCTATGCCTCTATGCGTTTAGAC
ATTCGTCGTATTGGTAGCATCAAAAAAGGTGACGAGGTTGTTGGTAATGAAACCCGCGTGAAAGTTGTGAAGAACAAAGT
TTCCCCTCCGTTCCGTGAAGCCATTTTTGACATCATGTATGGCGCTGGTATTTCTAGAGAGGGTGAAATTATTGATATGG
GCGTCGAAGCAGACCTCGTTGAAAAGTCAGGTTCTTGGTATAGCTACAACGGTGATCGTATTGGTCAAGGCAAAGACAAT
GTGCGCGAGTTCCTAAAAGAGAATCCAGCGATCGCTCAAGATATCGAGAAAAAGATTCGCGAGAAACTTGGAGTAAAAGC
GGGTTCAGCTGTTGTTACTGATGTGCTGGCTGAGGAAGAGGAAGTTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.058

98.898

0.802
  recA Neisseria gonorrhoeae MS11

73.636

90.909

0.669
  recA Neisseria gonorrhoeae MS11

73.636

90.909

0.669
  recA Neisseria gonorrhoeae strain FA1090

73.636

90.909

0.669
  recA Acinetobacter baylyi ADP1

69.477

94.766

0.658
  recA Acinetobacter baumannii D1279779

69.477

94.766

0.658
  recA Pseudomonas stutzeri DSM 10701

69.617

93.388

0.65
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.948

90.083

0.639
  recA Vibrio cholerae strain A1552

70.948

90.083

0.639
  recA Glaesserella parasuis strain SC1401

69.184

91.185

0.631
  recA Bacillus subtilis subsp. subtilis str. 168

67.791

89.807

0.609
  recA Helicobacter pylori 26695

67.485

89.807

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.327

94.215

0.606
  recA Helicobacter pylori strain NCTC11637

67.178

89.807

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.257

91.185

0.595
  recA Streptococcus pneumoniae R6

60.119

92.562

0.556
  recA Streptococcus pneumoniae Rx1

60.119

92.562

0.556
  recA Streptococcus pneumoniae D39

60.119

92.562

0.556
  recA Streptococcus pneumoniae TIGR4

60.119

92.562

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

61.963

89.807

0.556
  recA Streptococcus mutans UA159

57.971

95.041

0.551
  recA Streptococcus mitis NCTC 12261

58.929

92.562

0.545
  recA Streptococcus mitis SK321

59.394

90.909

0.54
  recA Lactococcus lactis subsp. cremoris KW2

59.091

90.909

0.537
  recA Streptococcus pyogenes NZ131

58.967

90.634

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

88.43

0.534

Multiple sequence alignment