Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AAHI02_RS10130 Genome accession   NZ_CP152475
Coordinates   2138686..2139687 (+) Length   333 a.a.
NCBI ID   WP_042720877.1    Uniprot ID   -
Organism   Chryseobacterium sp. POE27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2133686..2144687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHI02_RS10105 (AAHI02_10100) - 2134426..2135631 (-) 1206 WP_346986536.1 hypothetical protein -
  AAHI02_RS10110 (AAHI02_10105) - 2136068..2136265 (-) 198 WP_346986537.1 hypothetical protein -
  AAHI02_RS10115 (AAHI02_10110) - 2136433..2137230 (+) 798 WP_346986538.1 LuxR C-terminal-related transcriptional regulator -
  AAHI02_RS10120 (AAHI02_10115) - 2137298..2137633 (+) 336 WP_346986539.1 hypothetical protein -
  AAHI02_RS10125 (AAHI02_10120) - 2137654..2138493 (+) 840 WP_346986540.1 oxygenase MpaB family protein -
  AAHI02_RS10130 (AAHI02_10125) recA 2138686..2139687 (+) 1002 WP_042720877.1 recombinase RecA Machinery gene
  AAHI02_RS10135 (AAHI02_10130) htpG 2139923..2141815 (+) 1893 WP_346986541.1 molecular chaperone HtpG -
  AAHI02_RS10140 (AAHI02_10135) - 2141937..2142233 (-) 297 WP_346986542.1 MGMT family protein -
  AAHI02_RS10145 (AAHI02_10140) - 2142491..2142637 (+) 147 WP_346986543.1 hypothetical protein -
  AAHI02_RS10150 (AAHI02_10145) - 2142864..2143838 (-) 975 WP_346986544.1 deoxyhypusine synthase family protein -
  AAHI02_RS10155 (AAHI02_10150) - 2143865..2144509 (-) 645 WP_346986545.1 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35791.04 Da        Isoelectric Point: 5.8993

>NTDB_id=989614 AAHI02_RS10130 WP_042720877.1 2138686..2139687(+) (recA) [Chryseobacterium sp. POE27]
MSNIDDKKKALALVLDKLDKTYGKGTVMTLGDSSVDNTIEVIPSGSLGLDIALGVGGYPRGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRGYAGKLGIDLENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRVDIRKASAPIKNGDEA
VGSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKTGEILDQAVEQGIVKKSGSWFSYEETKLGQGRDAVKDVLKDNPELAE
ELENKIKEELKKK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=989614 AAHI02_RS10130 WP_042720877.1 2138686..2139687(+) (recA) [Chryseobacterium sp. POE27]
ATGAGTAATATAGACGACAAGAAAAAAGCACTCGCATTAGTGCTTGACAAACTAGATAAAACATACGGAAAAGGCACTGT
AATGACATTGGGCGACAGCTCTGTGGATAATACGATTGAAGTGATTCCTTCCGGTTCTTTGGGATTAGATATCGCTCTTG
GAGTGGGTGGCTACCCAAGAGGAAGAATCATTGAAATCTACGGTCCTGAATCTTCCGGTAAAACAACTTTAACACTTCAT
GCTATTGCTGAAGCTCAGAAAGCAGGCGGTATTGCTGCATTTATCGATGCAGAGCATGCTTTTGACAGAGGTTATGCCGG
AAAATTGGGAATCGATCTTGAAAACCTGATCATTTCACAGCCGGACAATGGTGAGCAGGCATTAGAAATCGCTGATAACC
TGATCCGTTCGGGAGCAATTGATATTGTAGTAATTGACTCTGTAGCCGCGCTTACCCCAAAAGCTGAAATTGAAGGAGAA
ATGGGAGATTCTAAAATGGGTCTTCATGCAAGATTGATGTCTCAGGCTCTAAGAAAGTTAACAGCAACCATTTCAAGAAC
AAAATGTACGGTAATTTTCATCAACCAGCTGAGAGAAAAAATCGGTGTAATGTTTGGAAACCCTGAAACAACCACCGGTG
GTAATGCTTTAAAATTCTATGCTTCTGTAAGAGTTGACATCAGAAAAGCAAGCGCACCGATTAAAAATGGTGATGAAGCC
GTTGGTAGCCGTGTAAAAGTGAAAATTGTAAAAAACAAAGTAGCACCACCTTTCAAGCAGGCAGAATTCGACATCATGTA
TGGTGAAGGTGTTTCTAAAACAGGAGAAATCCTGGATCAGGCTGTAGAACAAGGCATTGTGAAGAAAAGCGGATCTTGGT
TTAGTTATGAAGAAACAAAATTAGGCCAAGGTCGTGACGCAGTAAAAGATGTATTGAAAGATAATCCTGAACTTGCAGAA
GAATTGGAAAATAAGATTAAAGAAGAATTAAAGAAGAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

79.88

100

0.799
  recA Acinetobacter baumannii D1279779

65.031

97.898

0.637
  recA Acinetobacter baylyi ADP1

64.438

98.799

0.637
  recA Ralstonia pseudosolanacearum GMI1000

66.773

93.994

0.628
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

98.198

0.628
  recA Glaesserella parasuis strain SC1401

63.804

97.898

0.625
  recA Neisseria gonorrhoeae MS11

63.467

96.997

0.616
  recA Neisseria gonorrhoeae MS11

63.467

96.997

0.616
  recA Neisseria gonorrhoeae strain FA1090

63.467

96.997

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

62.577

97.898

0.613
  recA Helicobacter pylori 26695

62.385

98.198

0.613
  recA Helicobacter pylori strain NCTC11637

62.385

98.198

0.613
  recA Pseudomonas stutzeri DSM 10701

61.963

97.898

0.607
  recA Lactococcus lactis subsp. cremoris KW2

58.58

100

0.595
  recA Vibrio cholerae strain A1552

60.429

97.898

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.429

97.898

0.592
  recA Streptococcus mitis NCTC 12261

60

97.598

0.586
  recA Streptococcus mitis SK321

60

97.598

0.586
  recA Latilactobacillus sakei subsp. sakei 23K

60.062

96.997

0.583
  recA Streptococcus pyogenes NZ131

59.509

97.898

0.583
  recA Streptococcus pneumoniae D39

58.841

98.498

0.58
  recA Streptococcus pneumoniae Rx1

58.841

98.498

0.58
  recA Streptococcus pneumoniae R6

58.841

98.498

0.58
  recA Streptococcus pneumoniae TIGR4

58.841

98.498

0.58
  recA Streptococcus mutans UA159

58.589

97.898

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.748

97.898

0.556

Multiple sequence alignment