Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AAHB66_RS18345 Genome accession   NZ_CP152474
Coordinates   3840854..3841912 (-) Length   352 a.a.
NCBI ID   WP_142486888.1    Uniprot ID   A0AAP9DA62
Organism   Leclercia sp. S52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3835854..3846912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHB66_RS18330 (AAHB66_18335) csrA 3837091..3837276 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  AAHB66_RS18335 (AAHB66_18340) alaS 3837518..3840145 (-) 2628 WP_347113969.1 alanine--tRNA ligase -
  AAHB66_RS18340 (AAHB66_18345) recX 3840277..3840777 (-) 501 WP_347113970.1 recombination regulator RecX -
  AAHB66_RS18345 (AAHB66_18350) recA 3840854..3841912 (-) 1059 WP_142486888.1 recombinase RecA Machinery gene
  AAHB66_RS18350 (AAHB66_18355) pncC 3842000..3842497 (-) 498 WP_347113972.1 nicotinamide-nucleotide amidase -
  AAHB66_RS18355 (AAHB66_18360) mltB 3842672..3843766 (-) 1095 WP_347113973.1 lytic murein transglycosylase B -
  AAHB66_RS18360 (AAHB66_18365) srlA 3844035..3844598 (+) 564 WP_347113974.1 PTS glucitol/sorbitol transporter subunit IIC -
  AAHB66_RS18365 (AAHB66_18370) - 3844595..3845554 (+) 960 WP_347113975.1 PTS glucitol/sorbitol transporter subunit IIB -
  AAHB66_RS18370 (AAHB66_18375) srlB 3845567..3845929 (+) 363 WP_333854558.1 PTS glucitol/sorbitol transporter subunit IIA -
  AAHB66_RS18375 (AAHB66_18380) srlD 3845945..3846724 (+) 780 WP_106994503.1 sorbitol-6-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37840.27 Da        Isoelectric Point: 4.8819

>NTDB_id=989598 AAHB66_RS18345 WP_142486888.1 3840854..3841912(-) (recA) [Leclercia sp. S52]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
VAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLSNQDSKPQFAVDGEGVEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=989598 AAHB66_RS18345 WP_142486888.1 3840854..3841912(-) (recA) [Leclercia sp. S52]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGTTCCAT
CATGCGCCTGGGTGAAGATCGTTCCATGGATGTAGAAACTATCTCCACCGGTTCGCTTTCTCTGGATATTGCACTGGGTG
CTGGCGGCCTACCTATGGGTCGTATCGTAGAGATCTACGGGCCAGAATCCTCCGGTAAAACCACCCTGACCTTACAGGTT
GTGGCGGCTGCACAGCGCGAAGGCAAAACCTGTGCCTTTATCGATGCTGAGCACGCGCTGGATCCGGTCTACGCACGTAA
ACTGGGTGTTGATATCGACAACCTGCTCTGCTCCCAGCCGGATACCGGTGAGCAGGCACTGGAAATCTGTGACGCACTGG
CGCGCTCTGGCGCAGTAGACGTAATCATCGTCGACTCCGTTGCGGCACTGACGCCAAAAGCAGAAATCGAAGGTGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCCGTACGTCTGGATATCCGCCGTATCGGTGCCGTGAAAGACGGTGAGAACGTGGTGGGT
AGCGAAACTCGCGTGAAGGTTGTGAAGAACAAGATTGCTGCACCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAGAAAGCGGGCGCCTGGTACAGCT
ACAACGGCGACAAGATTGGTCAGGGTAAAGCGAATGCTATCTCCTGGCTGAAAGAGAACCCGGCGGCAGCAAAAGAGATC
GAGAAGAAGGTGCGTGAGCTTCTGCTCAGCAACCAGGATTCTAAACCGCAGTTCGCTGTTGATGGCGAAGGCGTTGAAGA
AACCAACGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.988

94.034

0.79
  recA Vibrio cholerae strain A1552

83.988

94.034

0.79
  recA Pseudomonas stutzeri DSM 10701

73.653

94.886

0.699
  recA Acinetobacter baylyi ADP1

70.893

98.58

0.699
  recA Acinetobacter baumannii D1279779

73.78

93.182

0.687
  recA Glaesserella parasuis strain SC1401

72.121

93.75

0.676
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.614

0.645
  recA Ralstonia pseudosolanacearum GMI1000

70.74

88.352

0.625
  recA Streptococcus mitis SK321

59.714

99.432

0.594
  recA Streptococcus mitis NCTC 12261

59.714

99.432

0.594
  recA Helicobacter pylori strain NCTC11637

61.424

95.739

0.588
  recA Helicobacter pylori 26695

61.128

95.739

0.585
  recA Streptococcus pneumoniae D39

62.848

91.761

0.577
  recA Streptococcus pneumoniae TIGR4

62.848

91.761

0.577
  recA Streptococcus pneumoniae Rx1

62.848

91.761

0.577
  recA Streptococcus pneumoniae R6

62.848

91.761

0.577
  recA Lactococcus lactis subsp. cremoris KW2

61.846

92.33

0.571
  recA Streptococcus pyogenes NZ131

61.846

92.33

0.571
  recA Streptococcus mutans UA159

61.538

92.33

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.76

94.602

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.42

92.045

0.565
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

91.193

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

91.193

0.557

Multiple sequence alignment