Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AAHH95_RS10475 Genome accession   NZ_CP152426
Coordinates   2054856..2055908 (-) Length   350 a.a.
NCBI ID   WP_342752812.1    Uniprot ID   -
Organism   Shouchella clausii strain TIL--21C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2049856..2060908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHH95_RS10455 - 2051345..2052007 (-) 663 WP_035201414.1 ATPase -
  AAHH95_RS10460 - 2051997..2052251 (-) 255 WP_011247039.1 hypothetical protein -
  AAHH95_RS10465 - 2052248..2053684 (-) 1437 WP_051881091.1 AAA family ATPase -
  AAHH95_RS10470 - 2053671..2054663 (-) 993 WP_011247041.1 metallophosphoesterase -
  AAHH95_RS10475 recA 2054856..2055908 (-) 1053 WP_342752812.1 recombinase RecA Machinery gene
  AAHH95_RS10480 - 2056139..2057752 (-) 1614 WP_011247043.1 DEAD/DEAH box helicase -
  AAHH95_RS10485 cinA 2057749..2058987 (-) 1239 WP_035201712.1 competence/damage-inducible protein A Machinery gene
  AAHH95_RS10490 pgsA 2059016..2059594 (-) 579 WP_011247045.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AAHH95_RS10495 - 2059750..2060655 (-) 906 WP_341604285.1 RodZ domain-containing protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38112.38 Da        Isoelectric Point: 5.0208

>NTDB_id=989274 AAHH95_RS10475 WP_342752812.1 2054856..2055908(-) (recA) [Shouchella clausii strain TIL--21C]
MSDRKQALDMALRHIEKQFGKGSIMKLGEQAEQRVSTVSSGTLALDIALGVGGYPKGRVIEVYGPESSGKTTVALHAIAE
VQRNGGQAAFIDAEHALDPVYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGALDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNEIVGNRT
KIKVVKNKVAPPFRLAEVDIMYGEGISREGSMLDIASELDIVEKSGAWYSYQEERLGQGRENAKQFLKENPEITAEIERL
IRDHHGLDGEAKLEEAAEEQAFEDVPLDLK

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=989274 AAHH95_RS10475 WP_342752812.1 2054856..2055908(-) (recA) [Shouchella clausii strain TIL--21C]
ATGAGTGATAGAAAACAAGCGCTTGACATGGCTTTACGCCATATTGAAAAACAATTTGGCAAAGGCTCTATTATGAAGCT
AGGTGAACAGGCTGAACAGCGCGTATCGACGGTATCAAGCGGCACCCTCGCCCTTGATATTGCTTTGGGCGTAGGTGGCT
ATCCAAAAGGAAGAGTCATTGAAGTATATGGACCAGAATCTTCCGGTAAAACAACCGTTGCTCTCCATGCAATTGCTGAA
GTGCAGCGCAATGGTGGCCAAGCCGCTTTTATTGATGCTGAGCATGCCCTGGATCCTGTCTATGCGAGCAAACTAGGCGT
TAATATCGATGAACTCTTGCTGTCCCAACCTGATACAGGCGAACAGGCACTTGAAATTGCGGAAGCACTTGTGCGCAGCG
GTGCCCTTGATATCATTGTCATTGATAGTGTAGCTGCGCTTGTACCAAAAGCGGAAATTGAAGGGGAAATGGGGGATTCC
CACGTCGGTTTGCAGGCCAGACTGATGTCTCAAGCGCTTCGTAAGCTTTCCGGAGCGATCAATAAATCGAAGACCATCGC
GATCTTTATTAACCAGATTCGTGAAAAAGTCGGCGTCATGTTTGGAAATCCTGAGACGACGCCAGGCGGAAGAGCGCTGA
AATTCTACTCTTCTGTCCGCCTTGAAGTGCGCCGCGCAGAGCAGCTGAAACAAGGGAATGAGATTGTCGGCAACCGAACC
AAAATCAAAGTCGTCAAAAACAAAGTCGCTCCGCCTTTCCGTTTAGCGGAAGTCGACATTATGTACGGAGAAGGTATTTC
CAGGGAAGGTTCGATGCTTGACATTGCCTCGGAACTCGACATTGTCGAAAAAAGCGGTGCATGGTACTCTTATCAGGAGG
AACGTCTTGGACAAGGCCGTGAAAATGCCAAACAGTTCCTGAAAGAAAACCCGGAAATTACAGCCGAAATTGAGCGTTTG
ATTCGTGACCACCACGGGCTCGACGGGGAAGCGAAGCTGGAAGAGGCAGCTGAAGAACAAGCTTTTGAAGATGTGCCTTT
AGATTTAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.366

93.714

0.8
  recA Streptococcus pneumoniae TIGR4

67.956

100

0.703
  recA Streptococcus pneumoniae Rx1

67.956

100

0.703
  recA Streptococcus pneumoniae D39

67.956

100

0.703
  recA Streptococcus pneumoniae R6

67.956

100

0.703
  recA Streptococcus mitis NCTC 12261

68.715

100

0.703
  recA Streptococcus mitis SK321

68.436

100

0.7
  recA Latilactobacillus sakei subsp. sakei 23K

72.923

92.857

0.677
  recA Streptococcus mutans UA159

69.436

96.286

0.669
  recA Streptococcus pyogenes NZ131

69.817

93.714

0.654
  recA Lactococcus lactis subsp. cremoris KW2

68.485

94.286

0.646
  recA Ralstonia pseudosolanacearum GMI1000

66.361

93.429

0.62
  recA Vibrio cholerae strain A1552

61.207

99.429

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.207

99.429

0.609
  recA Neisseria gonorrhoeae strain FA1090

64.832

93.429

0.606
  recA Neisseria gonorrhoeae MS11

64.832

93.429

0.606
  recA Neisseria gonorrhoeae MS11

64.832

93.429

0.606
  recA Acinetobacter baumannii D1279779

62.537

96.857

0.606
  recA Acinetobacter baylyi ADP1

64.615

92.857

0.6
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.415

93.714

0.594
  recA Glaesserella parasuis strain SC1401

64.688

91.429

0.591
  recA Pseudomonas stutzeri DSM 10701

64.062

91.429

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.774

93.429

0.577
  recA Helicobacter pylori 26695

61.538

92.857

0.571
  recA Helicobacter pylori strain NCTC11637

61.538

92.857

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

90.286

0.554

Multiple sequence alignment