Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AAGQ96_RS16710 Genome accession   NZ_CP152417
Coordinates   3639471..3640535 (-) Length   354 a.a.
NCBI ID   WP_147199512.1    Uniprot ID   -
Organism   Pantoea sp. MBD-2R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3634471..3645535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGQ96_RS16695 (AAGQ96_16695) csrA 3635550..3635735 (-) 186 WP_004155916.1 carbon storage regulator CsrA -
  AAGQ96_RS16700 (AAGQ96_16700) alaS 3635982..3638609 (-) 2628 WP_147199507.1 alanine--tRNA ligase -
  AAGQ96_RS16705 (AAGQ96_16705) - 3638751..3639266 (-) 516 WP_147199509.1 regulatory protein RecX -
  AAGQ96_RS16710 (AAGQ96_16710) recA 3639471..3640535 (-) 1065 WP_147199512.1 recombinase RecA Machinery gene
  AAGQ96_RS16715 (AAGQ96_16715) pncC 3640633..3641127 (-) 495 WP_342754089.1 nicotinamide-nucleotide amidase -
  AAGQ96_RS16720 (AAGQ96_16720) - 3641293..3642321 (-) 1029 WP_342754090.1 fimbrial protein -
  AAGQ96_RS16725 (AAGQ96_16725) - 3642374..3642901 (-) 528 WP_342754091.1 fimbrial protein -
  AAGQ96_RS16730 (AAGQ96_16730) - 3642892..3645447 (-) 2556 WP_342754092.1 fimbria/pilus outer membrane usher protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37834.33 Da        Isoelectric Point: 5.0504

>NTDB_id=989035 AAGQ96_RS16710 WP_147199512.1 3639471..3640535(-) (recA) [Pantoea sp. MBD-2R]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINIYGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANAGNFLKENAAVASEI
EAKLRATLLNNPDSKPDFVADPSDVDAAEEKENF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=989035 AAGQ96_RS16710 WP_147199512.1 3639471..3640535(-) (recA) [Pantoea sp. MBD-2R]
ATGGCTATTGACGAAAACAAGCAAAAAGCACTGGCAGCAGCGCTGGGCCAGATTGAAAAACAGTTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGCACGATGGATGTGGAAACGATCTCAACCGGATCTTTATCACTGGATATCGCGCTGGGCG
CTGGCGGTCTGCCAATGGGCCGTATCGTCGAAATCTATGGCCCGGAATCATCCGGTAAAACCACGCTGACGTTGCAGGTT
ATCGCTGCTGCACAGCGCAAAGGTAAAACCTGTGCCTTTATCGATGCAGAACACGCCCTCGATCCGGTCTATGCAAAAAA
GCTGGGCGTGGATATCGACAACCTGCTGTGTTCACAGCCGGATACGGGTGAGCAGGCGCTGGAAATCTGTGATGCGCTGG
CACGTTCTGGCGCGGTAGACGTTATCATCGTTGACTCCGTGGCGGCTCTGACGCCTAAAGCAGAAATCGAAGGCGAAATT
GGTGACTCCCACATGGGGCTTGCTGCTCGTATGATGAGTCAGGCAATGCGTAAGCTGGCCGGCAACCTGAAAAACTCCAA
TACGTTGCTGATCTTCATTAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGCGGTA
ACGCTCTGAAATTCTACGCTTCCGTCCGTCTGGATATCCGTCGTATCGGCGCGATCAAAGAAGGTGATGAAGTGGTGGGC
AGCGAAACCCGCGTGAAAGTGGTGAAAAACAAAATTGCCGCACCGTTCAAGCAGGCTGAGTTCCAGATTATGTACGGCGA
AGGCATCAATATCTACGGCGAGCTGGTCGACCTGGGCGTTAAGCACAAGCTGATTGAAAAAGCAGGTGCATGGTACAGCT
ACAACGGCGATAAGATCGGTCAGGGTAAAGCTAACGCAGGTAACTTCCTGAAAGAGAACGCGGCAGTCGCCAGCGAAATC
GAAGCTAAACTGCGCGCGACCTTGCTGAACAATCCTGACAGCAAGCCTGATTTCGTTGCTGACCCAAGCGACGTTGATGC
GGCGGAAGAGAAAGAGAACTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

85.366

92.655

0.791
  recA Vibrio cholerae O1 biovar El Tor strain E7946

85.366

92.655

0.791
  recA Pseudomonas stutzeri DSM 10701

73.41

97.74

0.718
  recA Glaesserella parasuis strain SC1401

69.886

99.435

0.695
  recA Acinetobacter baumannii D1279779

73.7

92.373

0.681
  recA Acinetobacter baylyi ADP1

73.171

92.655

0.678
  recA Neisseria gonorrhoeae MS11

68.923

91.808

0.633
  recA Neisseria gonorrhoeae MS11

68.923

91.808

0.633
  recA Neisseria gonorrhoeae strain FA1090

68.923

91.808

0.633
  recA Ralstonia pseudosolanacearum GMI1000

70.476

88.983

0.627
  recA Helicobacter pylori strain NCTC11637

61.424

95.198

0.585
  recA Helicobacter pylori 26695

61.128

95.198

0.582
  recA Lactococcus lactis subsp. cremoris KW2

62.346

91.525

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

62.813

90.395

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.468

92.373

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

61.656

92.09

0.568
  recA Streptococcus mitis SK321

61.656

92.09

0.568
  recA Streptococcus pneumoniae Rx1

61.656

92.09

0.568
  recA Streptococcus pneumoniae D39

61.656

92.09

0.568
  recA Streptococcus pneumoniae R6

61.656

92.09

0.568
  recA Streptococcus pneumoniae TIGR4

61.656

92.09

0.568
  recA Streptococcus mitis NCTC 12261

61.35

92.09

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.241

93.785

0.565
  recA Streptococcus mutans UA159

61.538

91.808

0.565
  recA Streptococcus pyogenes NZ131

61.538

91.808

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.077

91.808

0.542

Multiple sequence alignment