Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AAFF19_RS00520 Genome accession   NZ_CP152407
Coordinates   120177..121289 (-) Length   370 a.a.
NCBI ID   WP_008903814.1    Uniprot ID   -
Organism   Acidovorax sp. FHTAMBA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 115177..126289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFF19_RS00500 (AAFF19_00500) sucD 116327..117223 (-) 897 WP_008903818.1 succinate--CoA ligase subunit alpha -
  AAFF19_RS00505 (AAFF19_00505) sucC 117239..118399 (-) 1161 WP_008903817.1 ADP-forming succinate--CoA ligase subunit beta -
  AAFF19_RS00510 (AAFF19_00510) argC 118563..119495 (+) 933 WP_008903816.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  AAFF19_RS00515 (AAFF19_00515) recX 119622..120086 (-) 465 WP_008903815.1 recombination regulator RecX -
  AAFF19_RS00520 (AAFF19_00520) recA 120177..121289 (-) 1113 WP_008903814.1 recombinase RecA Machinery gene
  AAFF19_RS00525 (AAFF19_00525) - 121431..121937 (+) 507 WP_008903813.1 MarR family winged helix-turn-helix transcriptional regulator -
  AAFF19_RS00530 (AAFF19_00530) - 122034..122879 (+) 846 WP_034693315.1 N-formylglutamate amidohydrolase -
  AAFF19_RS00535 (AAFF19_00535) - 123042..123716 (+) 675 WP_008903811.1 response regulator transcription factor -
  AAFF19_RS00540 (AAFF19_00540) - 123797..125248 (+) 1452 WP_008903810.1 sensor histidine kinase -
  AAFF19_RS00545 (AAFF19_00545) - 125317..126033 (-) 717 WP_008903809.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39517.43 Da        Isoelectric Point: 5.2266

>NTDB_id=988910 AAFF19_RS00520 WP_008903814.1 120177..121289(-) (recA) [Acidovorax sp. FHTAMBA]
MDVAVKGTNPALPVNTEKAKALAAALAQIEKQFGKGTIMRLGEGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP
ESSGKTTLTLQVIAEMQKQGGTCAFVDAEHALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVA
ALTPKAEIEGEMGDSLPGLQARLMSQALRKLTSTIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRR
TGTIKKGEEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNAKIVEKSGAWYAYNGEKIGQGRDNARE
FLRENPDLAREIENKVRESLGIALLPAALEAAPADKPAKVAKGEKEDNNK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=988910 AAFF19_RS00520 WP_008903814.1 120177..121289(-) (recA) [Acidovorax sp. FHTAMBA]
ATGGACGTCGCAGTCAAAGGCACCAACCCGGCATTGCCAGTGAACACCGAAAAGGCCAAGGCCCTGGCCGCCGCGCTCGC
CCAGATCGAGAAGCAGTTTGGCAAGGGCACCATCATGCGCCTGGGTGAAGGCGAGGTGATCGAGGACATCCAGGTTGTCT
CCACCGGCTCGCTGGGCCTCGACATCGCCCTGGGCGTGGGTGGCCTGCCGCGCGGCCGGGTGGTTGAAATCTATGGCCCT
GAATCGTCGGGCAAGACCACGCTCACGCTGCAGGTCATTGCCGAGATGCAAAAGCAGGGCGGCACCTGCGCGTTCGTCGA
TGCCGAACACGCGCTGGATGTGCAATACGCCCAGAAGCTGGGCGTGCAGCTGTCTGACCTGCTGATCAGCCAGCCCGACA
CCGGCGAGCAGGCACTGGAAATTGTGGACAGCCTGGTGCGCTCGGGCGCCGTGGACCTGATCGTGGTGGACTCGGTGGCC
GCGCTCACGCCCAAGGCCGAAATCGAGGGTGAAATGGGCGACAGCCTGCCTGGCCTGCAGGCCCGCCTGATGAGCCAGGC
GCTGCGCAAGCTGACCTCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCG
TGATGTTCGGTTCGCCCGAAACCACCACCGGCGGCAATGCGCTCAAGTTCTACGCCTCGGTGCGGCTGGACATCCGCCGC
ACCGGCACCATCAAGAAGGGTGAAGAGGCCATCGGCAACGAAACCAAGGTCAAGGTGGTCAAGAACAAGGTGAGCCCGCC
GTTCAAGACGGCCGAGTTCGACATCCTCTTCGGCGAGGGCATCAGCCGCGAGGGCGAGATCATCGACATGGGCGTGAACG
CGAAGATCGTGGAAAAGAGCGGCGCCTGGTACGCCTACAACGGCGAAAAGATCGGCCAGGGCCGCGACAACGCCCGCGAG
TTCCTGCGCGAGAACCCCGACCTCGCCCGCGAGATCGAGAACAAGGTGCGCGAGAGCCTGGGCATTGCCCTGCTGCCCGC
GGCCCTGGAAGCCGCCCCTGCCGACAAGCCCGCCAAGGTTGCCAAGGGCGAGAAGGAAGACAACAACAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.699

86.216

0.722
  recA Pseudomonas stutzeri DSM 10701

72.783

88.378

0.643
  recA Neisseria gonorrhoeae MS11

71.903

89.459

0.643
  recA Neisseria gonorrhoeae MS11

71.903

89.459

0.643
  recA Neisseria gonorrhoeae strain FA1090

71.903

89.459

0.643
  recA Glaesserella parasuis strain SC1401

66.572

95.405

0.635
  recA Acinetobacter baylyi ADP1

71.56

88.378

0.632
  recA Vibrio cholerae strain A1552

71.254

88.378

0.63
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.254

88.378

0.63
  recA Acinetobacter baumannii D1279779

70.948

88.378

0.627
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

68.278

89.459

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.182

89.189

0.608
  recA Helicobacter pylori 26695

65.559

89.459

0.586
  recA Helicobacter pylori strain NCTC11637

65.559

89.459

0.586
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

88.378

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

63.636

89.189

0.568
  recA Lactococcus lactis subsp. cremoris KW2

61.818

89.189

0.551
  recA Streptococcus mutans UA159

61.212

89.189

0.546
  recA Streptococcus pyogenes NZ131

61.094

88.919

0.543
  recA Streptococcus pneumoniae Rx1

60

89.189

0.535
  recA Streptococcus pneumoniae D39

60

89.189

0.535
  recA Streptococcus pneumoniae R6

60

89.189

0.535
  recA Streptococcus pneumoniae TIGR4

60

89.189

0.535
  recA Streptococcus mitis NCTC 12261

59.697

89.189

0.532
  recA Streptococcus mitis SK321

59.697

89.189

0.532
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

86.757

0.524

Multiple sequence alignment