Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AAGT77_RS05755 Genome accession   NZ_CP152380
Coordinates   1250116..1251159 (+) Length   347 a.a.
NCBI ID   WP_342632091.1    Uniprot ID   -
Organism   Marinobacter alkaliphilus strain SBY-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1245116..1256159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGT77_RS05740 (AAGT77_05740) fdxA 1246228..1246551 (-) 324 WP_011785560.1 ferredoxin FdxA -
  AAGT77_RS05745 (AAGT77_05745) mutS 1246715..1249348 (-) 2634 WP_342632090.1 DNA mismatch repair protein MutS -
  AAGT77_RS05750 (AAGT77_05750) pncC 1249452..1249952 (+) 501 WP_152437649.1 nicotinamide-nucleotide amidase -
  AAGT77_RS05755 (AAGT77_05755) recA 1250116..1251159 (+) 1044 WP_342632091.1 recombinase RecA Machinery gene
  AAGT77_RS05760 (AAGT77_05760) - 1251428..1251895 (+) 468 WP_342632092.1 flavodoxin family protein -
  AAGT77_RS05765 (AAGT77_05765) - 1251896..1252273 (-) 378 WP_058093151.1 PilZ domain-containing protein -
  AAGT77_RS05770 (AAGT77_05770) - 1252513..1254921 (+) 2409 WP_342632093.1 ATP-binding protein -
  AAGT77_RS05775 (AAGT77_05775) fixJ 1254960..1255580 (+) 621 WP_058093114.1 response regulator FixJ -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37396.12 Da        Isoelectric Point: 5.5451

>NTDB_id=988764 AAGT77_RS05755 WP_342632091.1 1250116..1251159(+) (recA) [Marinobacter alkaliphilus strain SBY-1]
MEDNRKKALSAALGQIERQFGKGAVMKMGDQPREAIPAVSTGSLGLDVALGIGGLPYGRIVEIYGPESSGKTTLTLQVIA
EAQKAGKTCAFIDAEHALDPIYAEKLGVNVDDLLVSQPDTGEQALEIADMLVRSNAIDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTGNVKHANCLMVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVVGNE
TRVKVVKNKVSPPFKQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYNGDKIGQGKANACKFLEENMDIANEIEA
KVREKLMPKPVKKEAAEAPVEANGELL

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=988764 AAGT77_RS05755 WP_342632091.1 1250116..1251159(+) (recA) [Marinobacter alkaliphilus strain SBY-1]
ATGGAAGACAATCGCAAGAAAGCACTCAGCGCAGCACTCGGCCAGATTGAGCGCCAGTTCGGTAAAGGTGCCGTGATGAA
AATGGGCGACCAGCCCCGTGAAGCCATTCCTGCGGTATCCACCGGTTCCCTCGGGCTGGACGTCGCCCTGGGTATTGGCG
GTCTGCCCTACGGCCGGATCGTTGAAATCTACGGCCCGGAAAGCTCCGGTAAAACCACACTGACCCTGCAGGTTATTGCG
GAAGCCCAAAAGGCCGGAAAAACCTGCGCCTTCATTGACGCCGAGCACGCGCTCGACCCCATTTACGCGGAAAAGCTGGG
CGTAAACGTAGACGACCTGCTGGTGTCCCAGCCAGACACCGGCGAACAGGCCCTGGAAATCGCCGACATGCTGGTGCGCT
CCAACGCCATTGACGTGATCATCGTCGACTCCGTTGCCGCACTGACACCGAAAGCCGAAATCGAAGGCGAAATGGGCGAC
AGCCACGTAGGCCTCCAGGCCCGCCTGATGTCCCAGGCCCTGCGTAAACTGACCGGTAACGTCAAACACGCCAACTGCCT
GATGGTCTTCATCAACCAGATCCGTATGAAAATCGGCGTCATGTTCGGCAGCCCGGAAACCACCACCGGCGGTAACGCCC
TGAAATTCTACTCCTCCGTACGCTTGGACATCCGCCGCATCGGCGCTGTCAAAGAGGGCGACGAAGTGGTCGGTAACGAA
ACCCGCGTAAAAGTCGTCAAGAACAAGGTATCTCCGCCCTTCAAGCAGGCCGAGTTCCAGATCATGTACGGCAAGGGCAT
CTACCACATGGCCGAAGTGCTGGACATGGGCGTTAAAGAAGGCTTCGTCGACAAATCCGGCGCCTGGTACGCCTACAACG
GCGATAAAATCGGCCAGGGCAAAGCCAACGCCTGCAAGTTCCTGGAAGAGAACATGGACATCGCCAACGAAATCGAAGCC
AAGGTTCGCGAAAAACTGATGCCCAAGCCGGTGAAGAAAGAAGCGGCCGAGGCGCCGGTAGAAGCGAACGGCGAATTGCT
GTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.098

100

0.781
  recA Acinetobacter baylyi ADP1

71.758

100

0.718
  recA Acinetobacter baumannii D1279779

73.7

94.236

0.695
  recA Ralstonia pseudosolanacearum GMI1000

70.588

97.983

0.692
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.394

94.236

0.692
  recA Vibrio cholerae strain A1552

73.394

94.236

0.692
  recA Glaesserella parasuis strain SC1401

71.951

94.524

0.68
  recA Neisseria gonorrhoeae MS11

71.296

93.372

0.666
  recA Neisseria gonorrhoeae MS11

71.296

93.372

0.666
  recA Neisseria gonorrhoeae strain FA1090

71.296

93.372

0.666
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

94.236

0.599
  recA Helicobacter pylori strain NCTC11637

61.721

97.118

0.599
  recA Helicobacter pylori 26695

61.128

97.118

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.862

95.965

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.507

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

60.87

92.795

0.565
  recA Streptococcus mutans UA159

59.077

93.66

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.025

93.372

0.542
  recA Streptococcus pneumoniae D39

57.669

93.948

0.542
  recA Streptococcus pneumoniae R6

57.669

93.948

0.542
  recA Streptococcus pneumoniae TIGR4

57.669

93.948

0.542
  recA Streptococcus pneumoniae Rx1

57.669

93.948

0.542
  recA Lactococcus lactis subsp. cremoris KW2

58.204

93.084

0.542
  recA Streptococcus pyogenes NZ131

57.012

94.524

0.539
  recA Streptococcus mitis NCTC 12261

57.585

93.084

0.536
  recA Streptococcus mitis SK321

57.276

93.084

0.533

Multiple sequence alignment