Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AAG689_RS23400 Genome accession   NZ_CP152342
Coordinates   4815697..4816797 (-) Length   366 a.a.
NCBI ID   WP_406623999.1    Uniprot ID   -
Organism   Acidovorax sp. SDU_ACID1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4810697..4821797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG689_RS23385 secF 4811761..4812714 (+) 954 WP_406623996.1 protein translocase subunit SecF -
  AAG689_RS23390 - 4812771..4815125 (+) 2355 WP_406623997.1 DUF1631 family protein -
  AAG689_RS23395 recX 4815181..4815642 (-) 462 WP_406623998.1 recombination regulator RecX -
  AAG689_RS23400 recA 4815697..4816797 (-) 1101 WP_406623999.1 recombinase RecA Machinery gene
  AAG689_RS23405 - 4816908..4817396 (+) 489 WP_406624000.1 MarR family winged helix-turn-helix transcriptional regulator -
  AAG689_RS23410 - 4817453..4818127 (+) 675 WP_406624001.1 response regulator -
  AAG689_RS23415 - 4818185..4819630 (+) 1446 WP_406624002.1 sensor histidine kinase N-terminal domain-containing protein -
  AAG689_RS23420 - 4819698..4820810 (-) 1113 WP_406624003.1 CaiB/BaiF CoA transferase family protein -
  AAG689_RS23425 - 4820807..4821451 (-) 645 WP_406624004.1 3-hydroxyacyl-CoA dehydrogenase family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 38913.63 Da        Isoelectric Point: 5.0995

>NTDB_id=988502 AAG689_RS23400 WP_406623999.1 4815697..4816797(-) (recA) [Acidovorax sp. SDU_ACID1]
MDANANTEKAKALAAALAQIEKQFGKGTIMRLGEGEQIEDIQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGKTTLT
LQVVAEMQKQGGTCAFIDAEHALDTSYAQKLGVNLNDVLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAALVPKAEIE
GEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGTIKKGDE
AIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVEARIIEKSGAWYAYNGEKIGQGRDNTREFLRENPALA
REIENKVREGLGVALLPAAAPAATGDAPPPAEKPARGKKAEKAEEA

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=988502 AAG689_RS23400 WP_406623999.1 4815697..4816797(-) (recA) [Acidovorax sp. SDU_ACID1]
ATGGACGCAAACGCCAACACCGAAAAAGCCAAGGCCCTGGCCGCGGCCCTGGCCCAGATCGAAAAGCAGTTCGGCAAGGG
CACGATCATGCGCCTGGGCGAGGGCGAGCAGATTGAGGACATCCAGGTCGTCTCCACCGGCTCGCTGGGCCTGGACGTGG
CTTTGGGCGTGGGCGGCCTGCCGCGCGGCCGGGTGGTCGAGATCTACGGCCCCGAATCCTCGGGCAAGACCACGCTCACG
CTGCAGGTCGTGGCCGAGATGCAAAAGCAAGGCGGCACCTGCGCCTTCATCGACGCCGAACACGCGCTGGACACCAGCTA
CGCCCAGAAGCTCGGCGTGAACCTCAACGACGTGCTCATCAGCCAGCCCGACACCGGCGAACAGGCGCTGGAGATCGTGG
ACAGCCTCGTGCGCTCCGGCGCCGTGGACCTGATCGTCATCGACTCCGTCGCCGCCCTCGTGCCCAAGGCCGAAATCGAA
GGCGAGATGGGCGACGCCCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGTTGCGCAAGCTCACCGCCACCATCAA
GAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCCGAGACCACCA
CCGGCGGCAACGCGCTCAAGTTCTACGCCAGCGTGCGCCTGGACATCCGCCGCATCGGCACCATCAAGAAGGGCGACGAG
GCCATCGGCAACGAGACCAAAGTGAAGGTGGTCAAGAACAAGGTCTCGCCCCCGTTCAAGACGGCCGAGTTCGACATCCT
CTTCGGCGAAGGCATCTCGCGCGAGGGCGAGATCATCGACATGGGCGTGGAGGCGCGCATCATCGAGAAGAGCGGCGCCT
GGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACACGCGCGAATTCCTGCGCGAGAACCCTGCCCTCGCC
CGCGAGATCGAGAACAAGGTGCGCGAAGGCCTGGGCGTGGCCCTGCTGCCCGCAGCGGCCCCCGCCGCCACGGGCGATGC
CCCGCCCCCCGCCGAGAAGCCCGCCCGGGGCAAGAAGGCCGAGAAGGCCGAAGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.824

92.896

0.779
  recA Pseudomonas stutzeri DSM 10701

68.732

96.995

0.667
  recA Neisseria gonorrhoeae MS11

69.565

94.262

0.656
  recA Neisseria gonorrhoeae strain FA1090

69.565

94.262

0.656
  recA Neisseria gonorrhoeae MS11

69.565

94.262

0.656
  recA Acinetobacter baylyi ADP1

69.789

90.437

0.631
  recA Glaesserella parasuis strain SC1401

70.679

88.525

0.626
  recA Acinetobacter baumannii D1279779

69.184

90.437

0.626
  recA Vibrio cholerae strain A1552

68.58

90.437

0.62
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.58

90.437

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.767

90.437

0.604
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.868

91.257

0.601
  recA Latilactobacillus sakei subsp. sakei 23K

63.664

90.984

0.579
  recA Helicobacter pylori strain NCTC11637

64.329

89.617

0.577
  recA Helicobacter pylori 26695

64.329

89.617

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

89.344

0.574
  recA Lactococcus lactis subsp. cremoris KW2

62.424

90.164

0.563
  recA Streptococcus mutans UA159

61.515

90.164

0.555
  recA Streptococcus pyogenes NZ131

61.398

89.891

0.552
  recA Streptococcus pneumoniae Rx1

60.606

90.164

0.546
  recA Streptococcus pneumoniae D39

60.606

90.164

0.546
  recA Streptococcus pneumoniae R6

60.606

90.164

0.546
  recA Streptococcus pneumoniae TIGR4

60.606

90.164

0.546
  recA Streptococcus mitis SK321

60.303

90.164

0.544
  recA Streptococcus mitis NCTC 12261

60.303

90.164

0.544
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

87.705

0.536

Multiple sequence alignment