Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AAFP34_RS09535 Genome accession   NZ_CP152060
Coordinates   1999405..2000541 (-) Length   378 a.a.
NCBI ID   WP_342435296.1    Uniprot ID   -
Organism   Lactiplantibacillus paraplantarum strain lb01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1994405..2005541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFP34_RS09525 (AAFP34_09525) - 1996687..1997493 (-) 807 WP_021732543.1 TIGR00282 family metallophosphoesterase -
  AAFP34_RS09530 (AAFP34_09530) rny 1997616..1999175 (-) 1560 WP_021732544.1 ribonuclease Y -
  AAFP34_RS09535 (AAFP34_09535) recA 1999405..2000541 (-) 1137 WP_342435296.1 recombinase RecA Machinery gene
  AAFP34_RS09540 (AAFP34_09540) cinA 2000633..2001895 (-) 1263 WP_056988393.1 competence/damage-inducible protein A Machinery gene
  AAFP34_RS09545 (AAFP34_09545) pgsA 2002091..2002675 (-) 585 WP_021732547.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AAFP34_RS09550 (AAFP34_09550) - 2002698..2003570 (-) 873 WP_021732548.1 RodZ domain-containing protein -
  AAFP34_RS09555 (AAFP34_09555) - 2003674..2004975 (-) 1302 WP_021732549.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40566.91 Da        Isoelectric Point: 5.3715

>NTDB_id=987073 AAFP34_RS09535 WP_342435296.1 1999405..2000541(-) (recA) [Lactiplantibacillus paraplantarum strain lb01]
MADARKAALDTALKKIEKNFGKGAIMRMGDAAQTTISTISSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKQGGTAAYIDAENALDPIYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNR
VRIKVVKNKVAPPFKRAEVDIMYGHGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRENAKKYLDEHPDIMTEIRQ
KVRDAYGMDQIGDEEATETNDQAKDKATAKSASKGQGKTPKAGPTETALELDDQPTEK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=987073 AAFP34_RS09535 WP_342435296.1 1999405..2000541(-) (recA) [Lactiplantibacillus paraplantarum strain lb01]
TTGGCTGATGCACGGAAAGCAGCACTAGATACTGCCCTAAAAAAGATCGAAAAGAACTTTGGTAAAGGGGCGATTATGCG
GATGGGTGATGCTGCCCAGACGACGATTTCAACGATTTCAAGTGGATCGTTGGCCTTAGATGATGCGTTGGGTGTTGGCG
GCTACCCACGTGGCCGGATCGTAGAAATCTATGGTCCTGAAAGTTCAGGTAAAACGACCGTTGCGTTACACGCGGTGGCT
GAAGTTCAAAAGCAAGGTGGCACGGCAGCTTATATTGATGCTGAAAATGCCTTAGACCCTATTTATGCGGAACATTTGGG
GGTTAATATCGATGATCTATTGCTCTCGCAACCAGATACTGGTGAACAGGGGCTTGAAATCGCAGATGCCTTAGTTTCTA
GTGGTGCCGTTGATATTTTGGTTGTTGACTCAGTTGCGGCTTTAGTTCCACGGGCCGAAATTGAAGGTGAAATGGGTGAC
GCGCACGTTGGGTTACAAGCTCGACTCATGTCACAGGCATTACGAAAACTATCCGGAACGTTGAACAAGACTAAGACGAT
TGCATTATTTATTAATCAAATTCGTGAAAAAGTCGGGGTGATGTTTGGTAATCCCGAGACGACTCCGGGTGGTCGGGCGT
TGAAATTCTACGCAACAATTCGGTTGGAAGTTCGGCGGGCTGAACAAATTAAAGAGGGAACCAATATTATTGGTAACCGT
GTTCGAATCAAAGTTGTTAAAAACAAGGTGGCGCCACCATTTAAGCGAGCTGAAGTAGATATTATGTATGGTCATGGTAT
TTCACAAACTGGTGAAATTGTCGACATGGCTGCTGAAAAGGATATTGTGAAGAAGAGTGGTTCTTGGTATTCATACGGCG
ACGATCGGATTGGTCAAGGTCGTGAAAATGCGAAGAAATACCTGGACGAACATCCTGATATCATGACGGAAATTCGGCAA
AAGGTTCGGGACGCGTATGGCATGGACCAAATTGGTGATGAAGAAGCGACTGAAACTAATGATCAAGCTAAGGATAAGGC
CACAGCTAAGAGTGCTAGCAAGGGCCAAGGTAAGACACCCAAAGCGGGACCTACTGAGACAGCGCTAGAACTTGATGACC
AGCCAACCGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

83.529

89.947

0.751
  recA Bacillus subtilis subsp. subtilis str. 168

74.699

87.831

0.656
  recA Streptococcus pneumoniae Rx1

64.533

99.206

0.64
  recA Streptococcus pneumoniae D39

64.533

99.206

0.64
  recA Streptococcus pneumoniae R6

64.533

99.206

0.64
  recA Streptococcus pneumoniae TIGR4

64.533

99.206

0.64
  recA Streptococcus mutans UA159

63.66

99.735

0.635
  recA Streptococcus mitis NCTC 12261

67.733

91.005

0.616
  recA Streptococcus mitis SK321

68.235

89.947

0.614
  recA Streptococcus pyogenes NZ131

68.882

87.566

0.603
  recA Lactococcus lactis subsp. cremoris KW2

68.902

86.772

0.598
  recA Ralstonia pseudosolanacearum GMI1000

61.584

90.212

0.556
  recA Neisseria gonorrhoeae MS11

61.515

87.302

0.537
  recA Neisseria gonorrhoeae MS11

61.515

87.302

0.537
  recA Neisseria gonorrhoeae strain FA1090

61.515

87.302

0.537
  recA Pseudomonas stutzeri DSM 10701

62.848

85.45

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.846

85.979

0.532
  recA Acinetobacter baumannii D1279779

58.944

90.212

0.532
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.728

85.714

0.529
  recA Vibrio cholerae strain A1552

61.728

85.714

0.529
  recA Acinetobacter baylyi ADP1

61.42

85.714

0.526
  recA Glaesserella parasuis strain SC1401

57.726

90.741

0.524
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.061

86.772

0.521
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.394

87.302

0.519
  recA Helicobacter pylori 26695

58.41

86.508

0.505
  recA Helicobacter pylori strain NCTC11637

58.41

86.508

0.505

Multiple sequence alignment