Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MHI37_RS14940 Genome accession   NZ_CP152049
Coordinates   3538790..3539839 (+) Length   349 a.a.
NCBI ID   WP_076336032.1    Uniprot ID   A0A1R1DB22
Organism   Paenibacillus sp. FSL H8-0548     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3533790..3544839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI37_RS14910 (MHI37_14910) - 3534110..3534877 (+) 768 WP_076336037.1 DUF3388 domain-containing protein -
  MHI37_RS14915 (MHI37_14915) - 3534896..3535810 (+) 915 WP_076336036.1 RodZ domain-containing protein -
  MHI37_RS14920 (MHI37_14920) - 3535841..3536335 (+) 495 WP_076336035.1 YajQ family cyclic di-GMP-binding protein -
  MHI37_RS14925 (MHI37_14925) - 3536494..3536637 (+) 144 WP_179090170.1 hypothetical protein -
  MHI37_RS14930 (MHI37_14930) pgsA 3536634..3537209 (+) 576 WP_076336034.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHI37_RS14935 (MHI37_14935) - 3537296..3538546 (+) 1251 WP_076336033.1 competence/damage-inducible protein A -
  MHI37_RS14940 (MHI37_14940) recA 3538790..3539839 (+) 1050 WP_076336032.1 recombinase RecA Machinery gene
  MHI37_RS14945 (MHI37_14945) - 3539919..3540623 (+) 705 WP_256710290.1 RecX family transcriptional regulator -
  MHI37_RS14950 (MHI37_14950) rny 3540806..3542347 (+) 1542 WP_076336031.1 ribonuclease Y -
  MHI37_RS14955 (MHI37_14955) - 3542437..3543231 (+) 795 WP_076336030.1 TIGR00282 family metallophosphoesterase -
  MHI37_RS14960 (MHI37_14960) - 3543369..3543629 (+) 261 WP_006036664.1 stage V sporulation protein S -
  MHI37_RS14965 (MHI37_14965) - 3543741..3544685 (+) 945 WP_083676159.1 dipeptidase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37909.15 Da        Isoelectric Point: 4.9902

>NTDB_id=986843 MHI37_RS14940 WP_076336032.1 3538790..3539839(+) (recA) [Paenibacillus sp. FSL H8-0548]
MSDRRAALEMALRQIEKQFGKGSIMKLGESTHMQVETVPSGSLALDIALGIGGLPRGRVIEIYGPESSGKTTVALHAIAE
VQRIGGQAAFIDAEHALDPLYASKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAISKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTIRLDVRRIETLKQGNDMVGNRT
RIKVVKNKVAPPFKQAEVDIMYGEGISREGTLIDIGVELDIVQKSGAWFSYNGERLGQGRENAKQYLKDHKDVAEVIEKQ
IRDASNLSATANQANFKPEEDDEEFEDLE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=986843 MHI37_RS14940 WP_076336032.1 3538790..3539839(+) (recA) [Paenibacillus sp. FSL H8-0548]
TTGTCGGATCGTCGCGCTGCACTAGAAATGGCTTTGCGTCAAATTGAGAAACAATTTGGTAAAGGCTCCATCATGAAATT
GGGAGAATCCACACACATGCAAGTTGAGACCGTGCCCAGCGGTTCACTTGCTCTAGATATCGCATTAGGAATAGGCGGAT
TGCCGCGTGGTCGTGTTATTGAAATATATGGACCGGAATCTTCAGGTAAAACTACAGTTGCGCTTCATGCGATTGCTGAG
GTCCAACGTATTGGCGGACAAGCTGCCTTCATCGATGCAGAGCATGCACTGGATCCGCTTTATGCAAGCAAGCTTGGCGT
AAATATTGATGAGCTATTGCTTTCACAGCCAGATACGGGAGAGCAAGGTTTGGAAATCGCAGAAGCATTAGTTCGCAGTG
GTGCGGTTGATATCGTAGTTATTGACTCTGTTGCGGCACTTGTACCGAAAGCGGAAATTGAAGGCGATATGGGTGATTCT
CACGTTGGTCTTCAAGCGCGTCTGATGTCACAGGCTTTGCGCAAGCTCTCAGGAGCAATCAGCAAATCGAAGACCATTGC
GATCTTCATCAACCAATTGCGTGAGAAAGTAGGCGTAATGTTCGGTAACCCTGAGACAACGCCAGGCGGTCGCGCATTGA
AGTTCTACTCCACCATTCGTCTTGACGTGCGTCGTATTGAGACGCTGAAGCAAGGCAACGACATGGTTGGTAACCGTACT
CGTATTAAAGTAGTTAAAAATAAAGTGGCTCCTCCGTTTAAACAAGCTGAGGTTGATATCATGTACGGCGAAGGTATTTC
CAGAGAAGGTACGCTAATTGATATTGGCGTCGAGCTGGATATTGTACAGAAGAGCGGTGCGTGGTTCTCTTATAATGGCG
AGCGTTTGGGCCAAGGTCGCGAGAATGCGAAGCAGTACTTGAAGGATCATAAGGATGTTGCTGAGGTTATTGAGAAGCAG
ATCCGTGATGCGAGCAATTTGTCTGCCACTGCAAATCAGGCTAATTTCAAGCCTGAGGAAGACGACGAAGAATTTGAAGA
TCTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R1DB22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.18

93.696

0.779
  recA Latilactobacillus sakei subsp. sakei 23K

72.464

98.854

0.716
  recA Streptococcus pyogenes NZ131

70.679

92.837

0.656
  recA Streptococcus pneumoniae R6

68.788

94.556

0.65
  recA Streptococcus pneumoniae TIGR4

68.788

94.556

0.65
  recA Streptococcus pneumoniae Rx1

68.788

94.556

0.65
  recA Streptococcus pneumoniae D39

68.788

94.556

0.65
  recA Lactococcus lactis subsp. cremoris KW2

68.485

94.556

0.648
  recA Streptococcus mitis SK321

69.538

93.123

0.648
  recA Streptococcus mitis NCTC 12261

69.231

93.123

0.645
  recA Streptococcus mutans UA159

68.519

92.837

0.636
  recA Glaesserella parasuis strain SC1401

61.08

100

0.616
  recA Ralstonia pseudosolanacearum GMI1000

63.939

94.556

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.404

97.994

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.421

91.977

0.602
  recA Vibrio cholerae strain A1552

65.421

91.977

0.602
  recA Neisseria gonorrhoeae MS11

65.109

91.977

0.599
  recA Neisseria gonorrhoeae MS11

65.109

91.977

0.599
  recA Neisseria gonorrhoeae strain FA1090

65.109

91.977

0.599
  recA Acinetobacter baylyi ADP1

59.429

100

0.596
  recA Helicobacter pylori 26695

59.827

99.14

0.593
  recA Helicobacter pylori strain NCTC11637

59.827

99.14

0.593
  recA Acinetobacter baumannii D1279779

61.062

97.135

0.593
  recA Pseudomonas stutzeri DSM 10701

60.767

97.135

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

93.696

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.18

92.264

0.564

Multiple sequence alignment