Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NSQ46_RS11575 Genome accession   NZ_CP152008
Coordinates   2434644..2435705 (+) Length   353 a.a.
NCBI ID   WP_007128677.1    Uniprot ID   G4HBH0
Organism   Paenibacillus sp. FSL M8-0142     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2429644..2440705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ46_RS11550 (NSQ46_11550) - 2430230..2431219 (+) 990 WP_342576779.1 RodZ domain-containing protein -
  NSQ46_RS11555 (NSQ46_11555) - 2431305..2431478 (+) 174 WP_007128681.1 hypothetical protein -
  NSQ46_RS11560 (NSQ46_11560) - 2431640..2432131 (+) 492 WP_007128680.1 YajQ family cyclic di-GMP-binding protein -
  NSQ46_RS11565 (NSQ46_11565) pgsA 2432391..2432978 (+) 588 WP_007128679.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSQ46_RS11570 (NSQ46_11570) - 2433087..2434355 (+) 1269 WP_007128678.1 competence/damage-inducible protein A -
  NSQ46_RS11575 (NSQ46_11575) recA 2434644..2435705 (+) 1062 WP_007128677.1 recombinase RecA Machinery gene
  NSQ46_RS11580 (NSQ46_11580) - 2435851..2436582 (+) 732 WP_007128676.1 RecX family transcriptional regulator -
  NSQ46_RS11585 (NSQ46_11585) rny 2436936..2438477 (+) 1542 WP_213616434.1 ribonuclease Y -
  NSQ46_RS11590 (NSQ46_11590) - 2438544..2439398 (+) 855 WP_341033012.1 TIGR00282 family metallophosphoesterase -
  NSQ46_RS11595 (NSQ46_11595) - 2439529..2439789 (+) 261 WP_006211249.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38173.52 Da        Isoelectric Point: 5.0007

>NTDB_id=984576 NSQ46_RS11575 WP_007128677.1 2434644..2435705(+) (recA) [Paenibacillus sp. FSL M8-0142]
MSDRRAALEMALRQIEKQFGKGSIMKLGESTHMQVEIVPSGSLALDIALGTGGLPRGRIIEVYGPESSGKTTVALHAIAE
VQKTGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRVESIKMGNDVVGNRT
RIKVVKNKVAPPFKQAELDIMYGEGISREGSLIDIGTELDIVDKSGAWYSFGGDRLGQGRENAKQFLKEHPEVANVIENK
IREASNLTTVVPEPSASEKEQEELEEQDLFKVE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=984576 NSQ46_RS11575 WP_007128677.1 2434644..2435705(+) (recA) [Paenibacillus sp. FSL M8-0142]
TTGTCAGATCGTCGTGCTGCGCTTGAAATGGCGCTTCGTCAGATAGAGAAACAGTTCGGAAAAGGTTCCATCATGAAATT
GGGTGAGTCCACCCATATGCAGGTAGAGATTGTGCCTAGCGGATCGCTGGCATTGGATATAGCACTTGGAACCGGCGGAT
TGCCTAGAGGCCGGATTATTGAAGTATATGGACCGGAATCCTCCGGTAAAACAACTGTAGCGCTCCATGCGATTGCTGAG
GTTCAGAAGACTGGCGGACAAGCTGCGTTTATCGATGCCGAGCACGCACTGGATCCGTCCTATGCGAGCAAATTGGGCGT
TAACATCGATGAACTCCTGCTTTCCCAGCCGGATACGGGTGAGCAAGCGCTTGAAATTGCTGAAGCTTTGGTGCGCAGCG
GTGCAGTCGATATCATTGTTATCGACTCGGTCGCAGCGCTTGTGCCGAAGGCCGAGATTGAAGGCGACATGGGTGACTCC
CATGTGGGTCTGCAGGCTCGTCTGATGTCCCAGGCTCTGCGTAAACTGTCCGGCGCGATCAACAAGTCCAAAACGATTGC
CATCTTTATTAACCAGCTTCGTGAGAAGGTCGGCGTTATGTTCGGTAACCCTGAGACGACACCGGGTGGCCGTGCCTTGA
AGTTCTACTCCACCGTCCGTTTGGATGTACGCCGTGTAGAGAGCATTAAGATGGGGAATGACGTCGTAGGTAACCGCACA
CGGATTAAAGTGGTTAAGAACAAAGTTGCGCCTCCGTTTAAACAAGCCGAGCTTGACATTATGTACGGTGAAGGCATCTC
CAGAGAGGGAAGCCTGATCGATATCGGTACTGAGCTTGATATTGTGGATAAGAGCGGTGCTTGGTATTCCTTTGGCGGCG
ATCGTCTTGGCCAGGGACGTGAGAATGCGAAGCAATTCCTGAAGGAGCATCCGGAAGTGGCGAATGTGATCGAGAACAAA
ATCCGGGAAGCAAGCAACTTGACCACGGTTGTTCCTGAACCGAGCGCAAGCGAGAAGGAGCAAGAGGAGCTGGAAGAGCA
AGATCTATTTAAAGTGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4HBH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.875

92.635

0.768
  recA Latilactobacillus sakei subsp. sakei 23K

71.345

96.884

0.691
  recA Streptococcus pneumoniae D39

66.097

99.433

0.657
  recA Streptococcus pneumoniae Rx1

66.097

99.433

0.657
  recA Streptococcus pneumoniae R6

66.097

99.433

0.657
  recA Streptococcus pneumoniae TIGR4

66.097

99.433

0.657
  recA Streptococcus mutans UA159

64.689

100

0.649
  recA Streptococcus mitis SK321

69.231

92.068

0.637
  recA Streptococcus pyogenes NZ131

69.444

91.785

0.637
  recA Streptococcus mitis NCTC 12261

68.923

92.068

0.635
  recA Lactococcus lactis subsp. cremoris KW2

67.273

93.484

0.629
  recA Neisseria gonorrhoeae MS11

64.058

97.734

0.626
  recA Neisseria gonorrhoeae MS11

64.058

97.734

0.626
  recA Neisseria gonorrhoeae strain FA1090

64.058

97.734

0.626
  recA Ralstonia pseudosolanacearum GMI1000

65.663

94.051

0.618
  recA Vibrio cholerae strain A1552

66.978

90.935

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.978

90.935

0.609
  recA Acinetobacter baylyi ADP1

60.227

99.717

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.988

96.884

0.601
  recA Glaesserella parasuis strain SC1401

61.159

97.734

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

92.635

0.586
  recA Helicobacter pylori 26695

60.058

97.167

0.584
  recA Helicobacter pylori strain NCTC11637

59.767

97.167

0.581
  recA Acinetobacter baumannii D1279779

63.551

90.935

0.578
  recA Pseudomonas stutzeri DSM 10701

63.125

90.652

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.3

91.501

0.561

Multiple sequence alignment