Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NSQ60_RS08500 Genome accession   NZ_CP151976
Coordinates   1671820..1672863 (+) Length   347 a.a.
NCBI ID   WP_034281901.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0502     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1666820..1677863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ60_RS08475 (NSQ60_08475) - 1667617..1667874 (+) 258 WP_041109118.1 DUF3243 domain-containing protein -
  NSQ60_RS08480 (NSQ60_08480) - 1668006..1668797 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  NSQ60_RS08485 (NSQ60_08485) - 1668821..1669720 (+) 900 WP_046311020.1 helix-turn-helix domain-containing protein -
  NSQ60_RS08490 (NSQ60_08490) pgsA 1669794..1670375 (+) 582 WP_046311022.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSQ60_RS08495 (NSQ60_08495) cinA 1670392..1671642 (+) 1251 WP_046311024.1 competence/damage-inducible protein A Machinery gene
  NSQ60_RS08500 (NSQ60_08500) recA 1671820..1672863 (+) 1044 WP_034281901.1 recombinase RecA Machinery gene
  NSQ60_RS08505 (NSQ60_08505) rny 1673172..1674734 (+) 1563 WP_003211958.1 ribonuclease Y -
  NSQ60_RS08510 (NSQ60_08510) - 1674825..1675619 (+) 795 WP_024424109.1 TIGR00282 family metallophosphoesterase -
  NSQ60_RS08515 (NSQ60_08515) spoVS 1675822..1676082 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37841.00 Da        Isoelectric Point: 4.7737

>NTDB_id=982967 NSQ60_RS08500 WP_034281901.1 1671820..1672863(+) (recA) [Bacillus sp. FSL W8-0502]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT
RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDTNGVKAAEEEGQEELEFND

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=982967 NSQ60_RS08500 WP_034281901.1 1671820..1672863(+) (recA) [Bacillus sp. FSL W8-0502]
ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTTGGTAAAGGCTCTATTATGAAACT
AGGAGAGCAAACAGATACACGTATTTCAACAGTACCTAGTGGTTCGTTAGCACTTGATACTGCGCTTGGAATAGGCGGAT
ATCCCCGCGGCCGTATTATCGAAGTATATGGTCCAGAGAGTTCTGGTAAAACGACAGTAGCCCTTCATGCCATTGCTGAA
GTTCAGCAGCAGGGAGGACAAGCTGCATTTATTGATGCAGAGCATGCACTCGATCCAGTTTACGCTCAAAAACTAGGTGT
CAACATTGATGAACTGTTACTTTCTCAGCCGGATACAGGAGAGCAAGCACTTGAAATTGCAGAAGCTCTTGTCCGAAGCG
GGGCAGTTGATATTGTTGTTATTGACTCTGTAGCTGCTCTTGTACCAAAAGCAGAGATTGAAGGAGACATGGGTGATTCA
CACGTTGGTCTTCAAGCACGTTTGATGTCCCAAGCGCTCCGTAAACTATCAGGTGCCATCAACAAATCAAAAACAATTGC
CATCTTTATCAACCAAATTCGTGAAAAAGTTGGTGTCATGTTTGGTAACCCTGAAACAACGCCTGGTGGACGTGCGCTGA
AGTTCTATTCGTCTGTTCGTTTAGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAATGACATTATGGGGAATAAAACG
AGAATTAAAGTGGTCAAAAACAAAGTAGCACCTCCATTCCGTATTGCCGAAGTAGATATTATGTACGGTGAAGGGATCTC
AAAAGAGGGAGAAATCATCGACCTTGGAAGCGAGCTGGATATCGTACAAAAGAGCGGTGCCTGGTATTCTTACCAAGAGG
AACGTCTTGGACAAGGCCGTGAAAATGCGAAACAGTTCCTAAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAA
ATTCGCGAACACTACGGTTTGGATACAAACGGAGTGAAAGCAGCTGAAGAAGAAGGACAAGAAGAATTGGAGTTTAATGA
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.988

95.677

0.928
  recA Latilactobacillus sakei subsp. sakei 23K

75.077

93.66

0.703
  recA Streptococcus mitis SK321

67.442

99.135

0.669
  recA Streptococcus pneumoniae R6

69.091

95.101

0.657
  recA Streptococcus pneumoniae TIGR4

69.091

95.101

0.657
  recA Streptococcus pneumoniae D39

69.091

95.101

0.657
  recA Streptococcus mitis NCTC 12261

69.091

95.101

0.657
  recA Streptococcus pneumoniae Rx1

69.091

95.101

0.657
  recA Streptococcus mutans UA159

68.693

94.813

0.651
  recA Streptococcus pyogenes NZ131

67.988

94.524

0.643
  recA Lactococcus lactis subsp. cremoris KW2

66.364

95.101

0.631
  recA Neisseria gonorrhoeae strain FA1090

63.501

97.118

0.617
  recA Neisseria gonorrhoeae MS11

63.501

97.118

0.617
  recA Neisseria gonorrhoeae MS11

63.501

97.118

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.059

97.983

0.608
  recA Ralstonia pseudosolanacearum GMI1000

64.329

94.524

0.608
  recA Helicobacter pylori strain NCTC11637

64.615

93.66

0.605
  recA Helicobacter pylori 26695

64.615

93.66

0.605
  recA Glaesserella parasuis strain SC1401

61.471

97.983

0.602
  recA Acinetobacter baumannii D1279779

61.111

98.559

0.602
  recA Acinetobacter baylyi ADP1

61.176

97.983

0.599
  recA Vibrio cholerae strain A1552

64.174

92.507

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

92.507

0.594
  recA Pseudomonas stutzeri DSM 10701

61.446

95.677

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.236

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

92.219

0.556

Multiple sequence alignment