Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AAFN71_RS05850 Genome accession   NZ_CP151840
Coordinates   1397101..1398108 (+) Length   335 a.a.
NCBI ID   WP_159018721.1    Uniprot ID   -
Organism   Algibacter lectus strain AS40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1392101..1403108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFN71_RS05830 (AAFN71_05815) - 1393444..1393800 (+) 357 WP_304405344.1 DUF6686 family protein -
  AAFN71_RS05835 (AAFN71_05820) - 1393854..1394930 (-) 1077 WP_042502320.1 rhodanese-related sulfurtransferase -
  AAFN71_RS05840 (AAFN71_05825) - 1395341..1395832 (-) 492 WP_133967610.1 hypothetical protein -
  AAFN71_RS05845 (AAFN71_05830) - 1395984..1396592 (-) 609 WP_304405342.1 hypothetical protein -
  AAFN71_RS05850 (AAFN71_05835) recA 1397101..1398108 (+) 1008 WP_159018721.1 recombinase RecA Machinery gene
  AAFN71_RS05855 (AAFN71_05840) - 1398269..1398676 (+) 408 WP_159018722.1 hypothetical protein -
  AAFN71_RS05860 (AAFN71_05845) - 1398704..1399246 (+) 543 WP_304405339.1 RNA polymerase sigma factor -
  AAFN71_RS05865 (AAFN71_05850) - 1399246..1400808 (+) 1563 WP_304405337.1 outer membrane beta-barrel protein -
  AAFN71_RS05870 (AAFN71_05855) - 1400893..1401630 (-) 738 WP_074936637.1 lysophospholipid acyltransferase family protein -
  AAFN71_RS05875 (AAFN71_05860) trpS 1401745..1402713 (+) 969 WP_304405775.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36157.49 Da        Isoelectric Point: 5.8870

>NTDB_id=981049 AAFN71_RS05850 WP_159018721.1 1397101..1398108(+) (recA) [Algibacter lectus strain AS40]
MSSEKEAKLKALKLTLDKLDKAYGKGTVMKMSDAAIQDVEAIPSGSLGLDIALGVGGYPRGRVIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRFYAANLGVDIDNLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKSEIEGE
MGDSKMGLHARLMSQALRKLTGSISKTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKNSNGDV
LGNKTRVKVVKNKVAPPFKMAEFDIMYGEGVSKVGEILDVAVEYEIVKKSGSWFSYEDTKLGQGRDAVKAIIKDNPELFD
ELEQKIKAAIKESLN

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=981049 AAFN71_RS05850 WP_159018721.1 1397101..1398108(+) (recA) [Algibacter lectus strain AS40]
ATGAGCAGCGAAAAAGAAGCGAAATTAAAAGCCCTAAAACTTACTTTAGATAAACTAGATAAAGCCTACGGAAAAGGTAC
GGTAATGAAAATGAGCGATGCCGCTATTCAAGATGTTGAAGCTATTCCTTCAGGTTCTTTAGGTTTAGATATCGCATTAG
GCGTTGGTGGATATCCACGCGGACGTGTTATTGAAATATACGGACCAGAATCGTCGGGTAAAACCACATTAACTTTACAC
GCTATTGCCGAAGCTCAAAAAGCTGGTGGAATTGCAGCTTTTATTGATGCAGAGCATGCTTTCGATCGTTTTTACGCTGC
AAACCTTGGTGTAGATATAGATAACCTAATTATTTCTCAACCAGATAATGGTGAGCAAGCTTTAGAAATTGCCGATAATT
TAATTCGTTCTGGCGCTATCGATATTGTTGTTATCGATTCAGTTGCTGCATTAACGCCAAAAAGTGAAATTGAAGGCGAA
ATGGGAGATTCTAAAATGGGCTTACACGCACGTTTAATGTCTCAGGCTTTACGTAAACTTACAGGGTCTATTAGCAAAAC
AAACTGTACTGTAATATTTATTAACCAATTACGTGAAAAAATTGGTGTTATGTTCGGTAACCCAGAAACAACAACTGGTG
GTAACGCATTAAAATTCTACGCATCTGTACGTTTAGATATTCGTCGTTCTACCCAAATTAAAAACAGTAATGGTGATGTT
TTAGGTAACAAAACCAGAGTAAAAGTTGTAAAAAACAAAGTAGCTCCACCATTTAAAATGGCCGAATTCGATATTATGTA
CGGAGAAGGTGTAAGTAAGGTTGGTGAAATTCTTGATGTTGCTGTAGAGTACGAAATTGTAAAGAAAAGTGGTTCTTGGT
TTAGTTACGAAGATACTAAACTTGGGCAAGGTCGTGATGCTGTAAAAGCAATCATTAAAGACAATCCAGAGCTTTTTGAT
GAGTTAGAACAAAAAATAAAAGCAGCTATTAAAGAAAGCCTGAACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

75.821

100

0.758
  recA Acinetobacter baylyi ADP1

64.22

97.612

0.627
  recA Acinetobacter baumannii D1279779

64.596

96.119

0.621
  recA Glaesserella parasuis strain SC1401

62.349

99.104

0.618
  recA Ralstonia pseudosolanacearum GMI1000

66.667

92.239

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.272

96.716

0.612
  recA Neisseria gonorrhoeae MS11

65.495

93.433

0.612
  recA Neisseria gonorrhoeae strain FA1090

65.495

93.433

0.612
  recA Neisseria gonorrhoeae MS11

65.495

93.433

0.612
  recA Helicobacter pylori strain NCTC11637

62.577

97.313

0.609
  recA Streptococcus mitis NCTC 12261

63.354

96.119

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

64.038

94.627

0.606
  recA Helicobacter pylori 26695

62.27

97.313

0.606
  recA Lactococcus lactis subsp. cremoris KW2

62.848

96.418

0.606
  recA Streptococcus mitis SK321

63.043

96.119

0.606
  recA Streptococcus pyogenes NZ131

62.037

96.716

0.6
  recA Streptococcus pneumoniae D39

62.229

96.418

0.6
  recA Streptococcus pneumoniae TIGR4

62.229

96.418

0.6
  recA Streptococcus pneumoniae Rx1

62.229

96.418

0.6
  recA Streptococcus pneumoniae R6

62.229

96.418

0.6
  recA Vibrio cholerae strain A1552

61.491

96.119

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

96.119

0.591
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

97.015

0.591
  recA Pseudomonas stutzeri DSM 10701

60.923

97.015

0.591
  recA Streptococcus mutans UA159

60.494

96.716

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.764

96.119

0.555

Multiple sequence alignment