Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AAEY27_RS05175 Genome accession   NZ_CP151800
Coordinates   1100452..1101516 (+) Length   354 a.a.
NCBI ID   WP_342323843.1    Uniprot ID   -
Organism   Kosakonia sp. BYX6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1095452..1106516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEY27_RS05150 (AAEY27_05150) mltB 1095982..1097070 (+) 1089 WP_342323839.1 lytic murein transglycosylase B -
  AAEY27_RS05155 (AAEY27_05155) - 1097295..1097963 (+) 669 WP_342323840.1 ATP-binding cassette domain-containing protein -
  AAEY27_RS05160 (AAEY27_05160) - 1097960..1098823 (+) 864 WP_342323841.1 metal ABC transporter permease -
  AAEY27_RS05165 (AAEY27_05165) - 1098836..1099714 (+) 879 WP_342325467.1 metal ABC transporter substrate-binding protein -
  AAEY27_RS05170 (AAEY27_05170) pncC 1099864..1100361 (+) 498 WP_342323842.1 nicotinamide-nucleotide amidase -
  AAEY27_RS05175 (AAEY27_05175) recA 1100452..1101516 (+) 1065 WP_342323843.1 recombinase RecA Machinery gene
  AAEY27_RS05180 (AAEY27_05180) recX 1101585..1102085 (+) 501 WP_342323844.1 recombination regulator RecX -
  AAEY27_RS05185 (AAEY27_05185) alaS 1102216..1104846 (+) 2631 WP_342323845.1 alanine--tRNA ligase -
  AAEY27_RS05190 (AAEY27_05190) csrA 1105086..1105271 (+) 186 WP_007370562.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37934.26 Da        Isoelectric Point: 4.8799

>NTDB_id=980910 AAEY27_RS05175 WP_342323843.1 1100452..1101516(+) (recA) [Kosakonia sp. BYX6]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFHGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANATSWLKENPAAAKEI
EKKLREILLSNQNSAAEFTVDGNGADVEETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=980910 AAEY27_RS05175 WP_342323843.1 1100452..1101516(+) (recA) [Kosakonia sp. BYX6]
ATGGCTATCGACGAAAACAAACAAAAGGCGCTTGCAGCTGCACTGGGTCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGTCTGGGTGAAGACCGCTCCATGGATGTGGAAACCATTTCTACCGGCTCACTCTCTCTGGACATCGCGCTGGGCG
CGGGCGGTCTGCCAATGGGCCGTATCGTCGAAATCTACGGACCTGAATCTTCCGGTAAAACCACGCTGACTCTGCAAGTC
ATTGCTGCTGCGCAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCGGAACATGCGCTGGACCCTGTTTATGCGCGTAA
GTTGGGTGTTGATATCGACAACCTGCTGTGTTCCCAGCCGGACACCGGTGAGCAGGCGCTGGAAATCTGTGATGCGCTGG
CGCGTTCCGGCGCGGTTGACGTGCTGGTTGTCGACTCCGTTGCGGCACTGACGCCGAAAGCAGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTCGCGGCGCGTATGATGAGCCAGGCGATGCGTAAATTGGCCGGTAACCTGAAACAGTCCAA
CACGCTGCTTATCTTCATCAACCAGATCCGTATGAAAATCGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ACGCGCTGAAATTCTACGCTTCGGTACGTCTGGATATCCGCCGTATCGGCGCGGTGAAAGAGGGTGATAACGTGGTCGGC
AGCGAAACCCGCGTGAAAGTGGTGAAAAACAAAATCGCGGCGCCGTTCAAACAGGCTGAATTCCAGATTCTCTACGGTGA
AGGCATCAACTTCCACGGCGAGCTGGTCGATCTTGGCGTGAAAGAGAAGCTGATCGAAAAAGCTGGTGCCTGGTATAGCT
ACAACGGCGACAAAATCGGCCAGGGTAAAGCGAATGCCACGTCCTGGCTGAAAGAGAACCCGGCGGCAGCGAAAGAAATC
GAGAAAAAACTGCGCGAAATCCTGCTCAGCAACCAGAATTCCGCAGCGGAATTTACGGTTGATGGCAATGGCGCGGACGT
TGAAGAAACCAACGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.894

93.503

0.794
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.894

93.503

0.794
  recA Acinetobacter baylyi ADP1

72.647

96.045

0.698
  recA Pseudomonas stutzeri DSM 10701

73.731

94.633

0.698
  recA Glaesserella parasuis strain SC1401

70.085

99.153

0.695
  recA Acinetobacter baumannii D1279779

73.353

94.35

0.692
  recA Neisseria gonorrhoeae MS11

69.444

91.525

0.636
  recA Neisseria gonorrhoeae MS11

69.444

91.525

0.636
  recA Neisseria gonorrhoeae strain FA1090

69.444

91.525

0.636
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.853

0.619
  recA Streptococcus mitis SK321

59.659

99.435

0.593
  recA Streptococcus mitis NCTC 12261

59.375

99.435

0.59
  recA Helicobacter pylori strain NCTC11637

62.162

94.068

0.585
  recA Helicobacter pylori 26695

61.862

94.068

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

90.678

0.568
  recA Lactococcus lactis subsp. cremoris KW2

62.229

91.243

0.568
  recA Streptococcus pneumoniae Rx1

62.229

91.243

0.568
  recA Streptococcus pneumoniae D39

62.229

91.243

0.568
  recA Streptococcus pneumoniae R6

62.229

91.243

0.568
  recA Streptococcus pneumoniae TIGR4

62.229

91.243

0.568
  recA Streptococcus pyogenes NZ131

61.846

91.808

0.568
  recA Streptococcus mutans UA159

61.538

91.808

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.42

91.525

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.785

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

91.808

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.633

92.373

0.551

Multiple sequence alignment