Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AAE485_RS10860 Genome accession   NZ_CP151686
Coordinates   2176727..2177764 (-) Length   345 a.a.
NCBI ID   WP_409408823.1    Uniprot ID   -
Organism   Acidithiobacillus ferriphilus strain QBS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2171727..2182764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAE485_RS10845 (AAE485_10725) - 2172963..2173547 (+) 585 WP_409408820.1 hypothetical protein -
  AAE485_RS10850 (AAE485_10730) alaS 2173571..2176204 (-) 2634 WP_409408821.1 alanine--tRNA ligase -
  AAE485_RS10855 (AAE485_10735) - 2176274..2176726 (-) 453 WP_409408822.1 regulatory protein RecX -
  AAE485_RS10860 (AAE485_10740) recA 2176727..2177764 (-) 1038 WP_409408823.1 recombinase RecA Machinery gene
  AAE485_RS10865 (AAE485_10745) - 2177966..2178805 (-) 840 WP_409409850.1 CinA family protein -
  AAE485_RS10870 (AAE485_10750) - 2178820..2179305 (-) 486 WP_409408824.1 phosphatidylglycerophosphatase A -
  AAE485_RS10875 (AAE485_10755) thiL 2179295..2180317 (-) 1023 WP_409408825.1 thiamine-phosphate kinase -
  AAE485_RS10880 (AAE485_10760) gluQRS 2180379..2181254 (+) 876 WP_215893023.1 tRNA glutamyl-Q(34) synthetase GluQRS -
  AAE485_RS10885 (AAE485_10765) sfsA 2181281..2181979 (+) 699 WP_409408826.1 DNA/RNA nuclease SfsA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37029.17 Da        Isoelectric Point: 5.6871

>NTDB_id=979825 AAE485_RS10860 WP_409408823.1 2176727..2177764(-) (recA) [Acidithiobacillus ferriphilus strain QBS3]
MDEQRSKALSAALSQIDKQFGKGAVMRLGDHNAIKDIEVYSTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAI
ASCQAAGGTAAFIDAEHALDPGYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMG
DSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKKSDEVVGN
DTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAVNIE
QRIRAAAAGHPLAFSEDVVEPAAVE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=979825 AAE485_RS10860 WP_409408823.1 2176727..2177764(-) (recA) [Acidithiobacillus ferriphilus strain QBS3]
ATGGACGAACAACGTAGCAAGGCCCTTTCGGCGGCCCTCTCACAGATTGACAAGCAATTTGGTAAAGGCGCCGTCATGCG
TCTCGGTGATCATAATGCCATCAAGGACATTGAGGTCTACTCCACCGGTTCGCTGGGATTGGACCTTGCTCTAGGTGTCG
GTGGCCTGCCGCGGGGCCGGGTGGTAGAGATTTACGGACCGGAATCTTCGGGTAAAACGACTCTTACCCTGCACGCCATA
GCCAGTTGTCAGGCTGCCGGAGGCACGGCGGCTTTCATTGATGCCGAACATGCTCTGGACCCCGGTTATGCCCATAAGCT
TGGCGTCGATCTGGAAAACCTCCTGATCTCCCAGCCGGATACCGGCGAGCAGGCGCTGGAAATCGCCGATATGCTGGTGC
GCTCCGGGGCGGTTGACCTCATTGTTATCGACTCCGTGGCCGCACTGACCCCCAAAGCGGAAATCGAAGGCGACATGGGC
GACTCCCACGTCGGCTTGCAGGCGCGTCTGATGAGCCAGGCCCTGCGCAAGCTCACCGCCAATATCTCCCGGACCAACAC
CCTGGTCATTTTCATCAACCAGATTCGTATGAAAATCGGGGTGATGTACGGCAGCCCGGAAACCACCACCGGTGGTAACG
CCCTCAAATTCTACGCCTCCGTGCGTCTCGACATCCGCCGCATCGGCGCGATCAAAAAGAGCGACGAAGTGGTAGGCAAC
GATACCCGCGTCAAGGTGGTCAAGAATAAGGTCGCACCACCTTTCCGTGAAGCCGAATTTGCCATCTATTACGGTGAAGG
CATCTCCCGTCTTTCCGAGTTGGTGGACCTCGGCGTGAAGTTCGACATCGTCGAAAAAAGTGGCGCCTGGTACAGCTATC
AGGGAGAACGCATCGGCCAGGGCAAGGATAACGCCCGCCAGTATCTCAAGGAACATCCGGAGTTGGCGGTCAATATCGAG
CAGCGGATACGGGCAGCGGCAGCAGGACATCCACTGGCCTTTTCCGAAGACGTGGTAGAGCCCGCAGCGGTCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

71.06

100

0.719
  recA Acinetobacter baumannii D1279779

74.383

93.913

0.699
  recA Pseudomonas stutzeri DSM 10701

74.154

94.203

0.699
  recA Neisseria gonorrhoeae MS11

73.231

94.203

0.69
  recA Neisseria gonorrhoeae MS11

73.231

94.203

0.69
  recA Neisseria gonorrhoeae strain FA1090

73.231

94.203

0.69
  recA Ralstonia pseudosolanacearum GMI1000

75.079

91.884

0.69
  recA Glaesserella parasuis strain SC1401

71.429

95.362

0.681
  recA Vibrio cholerae strain A1552

71.296

93.913

0.67
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.296

93.913

0.67
  recA Helicobacter pylori strain NCTC11637

68

94.203

0.641
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.073

95.072

0.638
  recA Helicobacter pylori 26695

67.278

94.783

0.638
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.769

94.203

0.629
  recA Bacillus subtilis subsp. subtilis str. 168

66.25

92.754

0.614
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64

94.203

0.603
  recA Streptococcus pyogenes NZ131

62.577

94.493

0.591
  recA Latilactobacillus sakei subsp. sakei 23K

62.346

93.913

0.586
  recA Streptococcus pneumoniae TIGR4

61.963

94.493

0.586
  recA Streptococcus pneumoniae R6

61.963

94.493

0.586
  recA Streptococcus mutans UA159

61.963

94.493

0.586
  recA Streptococcus pneumoniae Rx1

61.963

94.493

0.586
  recA Streptococcus pneumoniae D39

61.963

94.493

0.586
  recA Streptococcus mitis NCTC 12261

61.846

94.203

0.583
  recA Streptococcus mitis SK321

61.846

94.203

0.583
  recA Lactococcus lactis subsp. cremoris KW2

59.939

94.783

0.568

Multiple sequence alignment