Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AADH33_RS02495 Genome accession   NZ_CP151283
Coordinates   588100..589158 (-) Length   352 a.a.
NCBI ID   WP_100749980.1    Uniprot ID   -
Organism   Psychrobacter sp. KFRI-CH2-11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 583100..594158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADH33_RS02470 (AADH33_02470) - 583397..583687 (+) 291 WP_348549451.1 succinate dehydrogenase assembly factor 2 -
  AADH33_RS02475 (AADH33_02475) - 583725..584183 (+) 459 WP_348549452.1 hypothetical protein -
  AADH33_RS02480 (AADH33_02480) - 584592..585302 (+) 711 WP_348549453.1 YidB family protein -
  AADH33_RS02485 (AADH33_02485) - 585530..586987 (+) 1458 WP_075100462.1 anion permease -
  AADH33_RS02490 (AADH33_02490) - 587017..588069 (-) 1053 WP_348549454.1 regulatory protein RecX -
  AADH33_RS02495 (AADH33_02495) recA 588100..589158 (-) 1059 WP_100749980.1 recombinase RecA Machinery gene
  AADH33_RS02500 (AADH33_02500) trmB 590257..591090 (-) 834 WP_348549455.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  AADH33_RS02505 (AADH33_02505) - 591366..592295 (+) 930 WP_348549936.1 DUF2628 domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37803.09 Da        Isoelectric Point: 4.8722

>NTDB_id=976076 AADH33_RS02495 WP_100749980.1 588100..589158(-) (recA) [Psychrobacter sp. KFRI-CH2-11]
MDDNKAKALKAALGQIEKQFGKNTIMQLGDDSAVLDADVVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAI
AECQKQGGTCAFIDAEHALDPVYARKLGVNTDDLLLSQPDNGEQALEITDMLVRSGAVDMIVVDSVAALTPRAEIEGEMG
DSHMGLQARLMSQALRKITGNAKRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGAVKNGDEIIGN
QTRVKVIKNKMAPPFRQAEFEITYGEGTNHLAEVIDLGVEIGAVGKAGSWYSYGDEKIGQGKANSVLFLKENPSIAQEIE
DKIREEKLGSKKDAKDTDASQKDENLAPEPVQ

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=976076 AADH33_RS02495 WP_100749980.1 588100..589158(-) (recA) [Psychrobacter sp. KFRI-CH2-11]
ATGGACGACAATAAAGCCAAAGCTCTCAAAGCCGCACTTGGTCAAATCGAAAAACAATTTGGTAAAAATACCATCATGCA
ACTGGGCGATGACTCTGCAGTCCTCGATGCCGATGTGGTCTCGACAGGCTCGCTAGGACTAGATATCGCGCTTGGTATTG
GCGGCTTACCAAAAGGCCGTATCATTGAGATTTATGGGCCAGAGAGCTCAGGTAAAACTACCATGACGCTACAAGCGATC
GCTGAGTGTCAAAAACAAGGCGGCACCTGTGCCTTTATCGATGCCGAGCATGCGCTTGATCCGGTTTATGCGCGTAAGCT
TGGGGTCAATACAGATGACCTACTGCTCTCTCAGCCTGATAACGGTGAGCAGGCGCTGGAGATTACCGATATGCTGGTAC
GCTCGGGGGCGGTCGATATGATCGTGGTCGACTCCGTCGCCGCCTTGACACCGCGCGCTGAGATTGAAGGTGAGATGGGC
GACTCACACATGGGTCTACAAGCCCGCTTGATGAGTCAAGCGCTGCGTAAGATCACAGGTAATGCCAAACGCTCTAACTG
TATGGTGGTGTTTATCAACCAGATCCGTATGAAAATCGGCGTGATGTTTGGTAGCCCAGAAACCACAACCGGTGGTAATG
CGCTGAAATTCTATGCCTCAGTACGTATGGATATTCGCCGTATCGGGGCGGTCAAAAACGGTGATGAAATCATCGGCAAC
CAAACCCGTGTCAAGGTCATCAAAAACAAAATGGCACCACCCTTCCGCCAAGCTGAGTTTGAAATCACTTATGGCGAAGG
CACCAATCACCTAGCAGAAGTCATCGACTTAGGTGTCGAAATTGGCGCTGTGGGTAAAGCAGGCTCTTGGTATAGCTATG
GCGATGAAAAAATCGGCCAGGGTAAAGCCAACTCTGTGCTTTTCTTAAAAGAAAACCCTAGTATTGCCCAAGAAATCGAA
GATAAGATCCGTGAAGAAAAGCTTGGTAGCAAAAAAGACGCCAAAGACACTGACGCCTCTCAAAAAGATGAAAACCTAGC
GCCTGAGCCAGTACAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

78.378

94.602

0.741
  recA Acinetobacter baumannii D1279779

78.963

93.182

0.736
  recA Pseudomonas stutzeri DSM 10701

71.637

97.159

0.696
  recA Vibrio cholerae strain A1552

72

92.33

0.665
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72

92.33

0.665
  recA Glaesserella parasuis strain SC1401

72.36

91.477

0.662
  recA Neisseria gonorrhoeae MS11

69.753

92.045

0.642
  recA Neisseria gonorrhoeae MS11

69.753

92.045

0.642
  recA Neisseria gonorrhoeae strain FA1090

69.753

92.045

0.642
  recA Ralstonia pseudosolanacearum GMI1000

71.704

88.352

0.634
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.385

92.33

0.622
  recA Bacillus subtilis subsp. subtilis str. 168

64.417

92.614

0.597
  recA Helicobacter pylori strain NCTC11637

63.804

92.614

0.591
  recA Helicobacter pylori 26695

63.497

92.614

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.424

93.75

0.585
  recA Streptococcus mutans UA159

55.801

100

0.574
  recA Streptococcus mitis NCTC 12261

58.065

96.875

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.875

90.909

0.563
  recA Streptococcus mitis SK321

57.771

96.875

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

60.494

92.045

0.557
  recA Streptococcus pneumoniae R6

59.259

92.045

0.545
  recA Streptococcus pneumoniae Rx1

59.259

92.045

0.545
  recA Streptococcus pneumoniae D39

59.259

92.045

0.545
  recA Streptococcus pneumoniae TIGR4

59.259

92.045

0.545
  recA Streptococcus pyogenes NZ131

57.975

92.614

0.537
  recA Lactococcus lactis subsp. cremoris KW2

57.453

91.477

0.526

Multiple sequence alignment