Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AACG61_RS09355 Genome accession   NZ_CP151276
Coordinates   1824575..1825648 (-) Length   357 a.a.
NCBI ID   WP_411836866.1    Uniprot ID   -
Organism   Paracoccus sp. ME4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1819575..1830648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACG61_RS09335 (AACG61_09330) - 1820302..1820586 (+) 285 WP_411836862.1 DUF4177 domain-containing protein -
  AACG61_RS09340 (AACG61_09335) - 1820591..1821385 (-) 795 WP_411836863.1 class II glutamine amidotransferase -
  AACG61_RS09345 (AACG61_09340) - 1821445..1821744 (-) 300 WP_411836864.1 DUF1330 domain-containing protein -
  AACG61_RS09350 (AACG61_09345) alaS 1821741..1824398 (-) 2658 WP_411836865.1 alanine--tRNA ligase -
  AACG61_RS09355 (AACG61_09350) recA 1824575..1825648 (-) 1074 WP_411836866.1 recombinase RecA Machinery gene
  AACG61_RS09360 (AACG61_09355) - 1825886..1826479 (+) 594 WP_411836867.1 hypothetical protein -
  AACG61_RS09365 (AACG61_09360) - 1826491..1828608 (-) 2118 WP_411836868.1 ATP-binding protein -
  AACG61_RS09370 (AACG61_09365) - 1828670..1829818 (-) 1149 WP_411836869.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38316.70 Da        Isoelectric Point: 4.9812

>NTDB_id=976064 AACG61_RS09355 WP_411836866.1 1824575..1825648(-) (recA) [Paracoccus sp. ME4]
MAQASIFDMTDKRAADKQKALDSALAQIERQFGKGSIMKLGKDSPVAEIEATSTGSLGLDIALGIGGLPKGRIIEIFGPE
SSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAVSLVVVDSVAA
LTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASIGRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRT
GAVKDRDEVVGNATRVKVVKNKVAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGAWYSYGDERIGQGRENAKQF
LRDRTDVAFAIEDKIRASHGLEFGVAEGGEDDSVTEE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=976064 AACG61_RS09355 WP_411836866.1 1824575..1825648(-) (recA) [Paracoccus sp. ME4]
ATGGCACAGGCGAGCATCTTCGACATGACGGACAAACGCGCGGCGGACAAGCAAAAGGCGCTGGACAGTGCCTTGGCCCA
GATCGAACGGCAGTTCGGCAAGGGCTCGATCATGAAGCTGGGCAAGGACAGCCCGGTGGCCGAGATCGAGGCCACCTCGA
CCGGATCGCTTGGGCTCGACATCGCACTTGGCATCGGCGGGCTGCCCAAGGGGCGCATCATCGAGATCTTCGGGCCGGAA
AGCTCCGGCAAGACCACGCTCACGCTGCATGTCGTGGCCGAGGAGCAGAAGAAGGGCGGCGTCTGCGCCTTCGTCGATGC
GGAACACGCGCTGGACCCGCAATATGCCAAGAAGCTGGGCGTGAACCTCGACGAGCTACTGATCAGCCAGCCCGACACGG
GCGAGCAGGCGCTGGAGATCGTGGATACGCTGGTGCGGTCGGGCGCGGTCAGCCTGGTCGTGGTCGACTCGGTCGCGGCG
CTGACGCCCAAGTCCGAGATCGAGGGCGACATGGGCGACATGCAGATGGGCAGCCAGGCCCGCCTGATGAGCCAGGCCAT
GCGCAAGCTGACAGCCAGCATCGGGCGGTCGAACTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCAACCCTGAGACCACGACCGGCGGCAACGCGCTGAAGTTCTATGCCTCGGTCCGTCTGGACATCCGCCGCACC
GGCGCGGTCAAGGACCGCGACGAGGTCGTGGGCAACGCGACCCGCGTCAAGGTGGTCAAGAACAAGGTCGCGCCGCCCTT
CCGGCAGGTCGAGTTCGACATCATGTATGGCGAGGGCATCAGCAAGGTCGGCGAACTGATCGACCTGGGCGTCAAGGCCG
GCGTGGTCGAGAAGTCGGGCGCCTGGTATTCCTACGGCGACGAGCGCATCGGCCAGGGTCGCGAGAACGCCAAGCAGTTC
CTGCGCGACCGGACCGATGTGGCCTTCGCCATCGAGGACAAGATCCGCGCGAGCCACGGCCTGGAGTTCGGCGTGGCCGA
GGGCGGCGAGGACGACTCCGTGACCGAGGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

68.047

94.678

0.644
  recA Neisseria gonorrhoeae MS11

68.047

94.678

0.644
  recA Neisseria gonorrhoeae strain FA1090

68.047

94.678

0.644
  recA Ralstonia pseudosolanacearum GMI1000

72.611

87.955

0.639
  recA Pseudomonas stutzeri DSM 10701

70.807

90.196

0.639
  recA Glaesserella parasuis strain SC1401

70.938

89.636

0.636
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.717

89.916

0.636
  recA Vibrio cholerae strain A1552

70.717

89.916

0.636
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.272

94.678

0.627
  recA Acinetobacter baumannii D1279779

68.847

89.916

0.619
  recA Acinetobacter baylyi ADP1

68.536

89.916

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

66.768

91.877

0.613
  recA Helicobacter pylori strain NCTC11637

66.564

91.317

0.608
  recA Helicobacter pylori 26695

65.951

91.317

0.602
  recA Streptococcus mitis SK321

59.28

100

0.599
  recA Streptococcus mitis NCTC 12261

59.003

100

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.417

91.317

0.588
  recA Streptococcus pneumoniae Rx1

60.355

94.678

0.571
  recA Streptococcus pneumoniae D39

60.355

94.678

0.571
  recA Streptococcus pneumoniae R6

60.355

94.678

0.571
  recA Streptococcus pneumoniae TIGR4

60.355

94.678

0.571
  recA Lactococcus lactis subsp. cremoris KW2

59.467

94.678

0.563
  recA Streptococcus pyogenes NZ131

59.347

94.398

0.56
  recA Streptococcus mutans UA159

58.876

94.678

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

60.736

91.317

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.202

91.317

0.541

Multiple sequence alignment